Browse by Function Classification, Virulence Factor or Subcellular Localization

Browse by Pseudomonas aeruginosa PAO1 Genome Project function class
Please select from one or more of these genomes: (required) Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa PAO1 (Sep2000) * Pseudomonas aeruginosa PA14
Adaptation, Protection Amino acid biosynthesis and metabolism Antibiotic resistance and susceptibility Motility & Attachment Biosynthesis of cofactors, prosthetic groups and carriers Carbon compound catabolism Cell division Cell wall / LPS / capsule Central intermediary metabolism Chaperones & heat shock proteins Chemotaxis DNA replication, recombination, modification and repair Energy metabolism Fatty acid and phospholipid metabolism Hypothetical, unclassified, unknown Membrane proteins Nucleotide biosynthesis and metabolism Protein secretion/export apparatus Putative enzymes Related to phage, transposon, or plasmid Transcription, RNA processing and degradation Transcriptional regulators Translation, post-translational modification, degradation Transport of small molecules Two-component regulatory systems Secreted Factors (toxins, enzymes, alginate) Non-coding RNA gene
* Please note: We discourage searches of the original Pseudomonas aeruginosa PAO1 annotation since it is not updated

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Browse by TIGR ROLE(all genomes)
Please select from one or more of these genomes: (required) Pseudomonas aeruginosa PAO1 Pseudomonas putida KT2440 Pseudomonas aeruginosa PA14 Pseudomonas putida F1 Pseudomonas aeruginosa LES Pseudomonas putida W619 Pseudomonas aeruginosa PA7 Pseudomonas stutzeri A1501 Pseudomonas entomophila L48 Pseudomonas syringae B728a Pseudomonas fluorescens Pf-5 Pseudomonassyringae DC3000 Pseudomonasfluorescens PfO-1 Pseudomonas syringae phaseolicola 1448A Pseudomonas mendocina ymp
Amino acid biosynthesis Biosynthesis of cofactors, prosthetic groups, and carriers Cell envelope Cellular processes Central intermediary metabolism DNA metabolism Energy metabolism Fatty acid and phospholipid metabolism Hypothetical proteins Mobile and extrachromosomal element functions Protein fate Protein synthesis Purines, pyrimidines, nucleosides, and nucleotides Regulatory functions Signal transduction Transcription Transport and binding proteins Unknown function

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Browse by TIGR SubRoles

Please select from one or more of these genomes: (required) Pseudomonas aeruginosa PAO1 Pseudomonas putida KT2440 Pseudomonas aeruginosa PA14 Pseudomonas putida F1 Pseudomonas aeruginosa LES Pseudomonas putida W619 Pseudomonas aeruginosa PA7 Pseudomonas stutzeri A1501 Pseudomonas entomophila L48 Pseudomonas syringae B728a Pseudomonas fluorescens Pf-5 Pseudomonassyringae DC3000 Pseudomonasfluorescens PfO-1 Pseudomonas syringae phaseolicola 1448A Pseudomonas mendocina ymp

Adaptations to atypical conditions Amino acids and amines Amino acids, peptides and amines Amino sugars Anaerobic Anions Aromatic amino acid family Aspartate family ATP-proton motive force interconversion Biosynthesis Biosynthesis and degradation of murein sacculus and peptidoglycan Biosynthesis and degradation of polysaccharides Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides Biotin Carbohydrates, organic alcohols, and acids Cations and iron carrying compounds Cell division Chemotaxis and motility Chlorophyll Chromosome-associated proteins Conserved Hypothetical proteins Degradation Degradation of DNA Degradation of proteins, peptides, and glycopeptides Degradation of RNA Detoxification DNA interactions DNA replication, recombination, and repair DNA transformation DNA-dependent RNA polymerase Electron transport Entner-Doudoroff Enzymes of unknown specificity Fermentation Folic acid General Glutamate family Glutathione and analogs Glycolysis/gluconeogenesis Heme, porphyrin, and cobalamin Histidine family Lipoate Menaquinone and ubiquinone Molybdopterin Nitrogen metabolism No Data Nucleosides, purines and pyrimidines Nucleotide and nucleoside interconversions Other Pantothenate and coenzyme A Pathogenesis Pentose phosphate pathway Phosphorus compounds Photosynthesis Plasmid functions Polyamine biosynthesis Prophage functions Protein and peptide secretion and trafficking Protein folding and stabilization Protein interactions Protein modification and repair PTS Purine ribonucleotide biosynthesis Pyridine nucleotides Pyridoxine Pyrimidine ribonucleotide biosynthesis Pyruvate dehydrogenase Pyruvate family Restriction/modification Riboflavin, FMN, and FAD Ribosomal proteins: synthesis and modification RNA interactions RNA processing Salvage of nucleosides and nucleotides Serine family Small molecule interactions Sporulation and germination Sugars Sulfur metabolism TCA cycle Thiamine Toxin production and resistance Transcription factors Translation factors tRNA aminoacylation tRNA and rRNA base modification Two-component systems Unknown substrate

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Browse by COG category

Please select from one or more of these genomes: (required) Pseudomonas aeruginosa PAO1 Pseudomonas putida KT2440 Pseudomonas aeruginosa PA14 Pseudomonas putida F1 Pseudomonas aeruginosa LES Pseudomonas putida W619 Pseudomonas aeruginosa PA7 Pseudomonas stutzeri A1501 Pseudomonas entomophila L48 Pseudomonas syringae B728a Pseudomonas fluorescens Pf-5 Pseudomonassyringae DC3000 Pseudomonasfluorescens PfO-1 Pseudomonas syringae phaseolicola 1448A Pseudomonas mendocina ymp

Amino acid transport and metabolism Carbohydrate transport and metabolism Cell division and chromosome partitioning Cell envelope biogenesis, outer membrane Cell motility and secretion Coenzyme metabolism DNA replication, recombination, and repair Energy production and conversion Function unknown General function prediction only Inorganic ion transport and metabolism Lipid metabolism Nucleotide transport and metabolism Posttranslational modification, protein turnover, chaperones Secondary metabolites biosynthesis, transport, and catabolism Signal transduction mechanisms Transcription Translation, ribosomal structure and biogenesis

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Browse by Virulence Factor (According to the VFDB)

Virulence factor gene list based on data from the Virulence Factor Database as described by Yang et al.(2008)

Please select from one or more of these genomes: (required) Pseudomonas aeruginosa PAO1 Pseudomonas putida KT2440 Pseudomonas aeruginosa PA14 Pseudomonas putida F1 Pseudomonas aeruginosa PA7 Pseudomonas stutzeri A1501 Pseudomonas entomophila L48 Pseudomonas syringae B728a Pseudomonas fluorescens Pf-5 Pseudomonas syringae DC3000 Pseudomonas fluorescens PfO-1 Pseudomonas syringae phaseolicola 1448A Pseudomonas mendocina ymp

All virulence factors Achromobactin biosynthesis and transport Acylhomoserine lactone synthase Alginate biosynthesis Alginate regulation Alkaline protease Elastase Flagella GacS/GacA two-component system Harpins, pilus-associated proteins and other candidate TTSS helpers Hcp secretion island-1 encoded type VI secretion system (H-T6SS) Hemolytic phospholipase C Hydrogen cyanide production LPS O-antigen (P. aeruginosa) N-(3-oxo-dodecanoyl)-L-homoserine lactone QS system N-(3-oxo-hexanoyl)-Lhomoserine lactone QS system N-(butanoyl)-L-homoserine lactone QS system Non-hemolytic phospholipase C P. aeruginosa TTSS P. aeruginosa TTSS translocated effectors P. syringae TTSS P. syringae TTSS effectors Phenazines biosynthesis Phospholipase C Phospholipase D Phytotoxin coronatine Phytotoxin phaseolotoxin Phytotoxin syringomycin Phytotoxin syringopeptin Protease IV Pyochelin Pyochelin receptor Pyoverdine Pyoverdine receptors Rhamnolipid biosynthesis TccC-type insecticidal toxins Type IV pili biosynthesis Type IV pili twitching motility related proteins Yersiniabactin

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Browse by Virulence Factor Category (According to the VFDB)

Virulence factor gene list based on data from the Virulence Factor Database as described by Yang et al.(2008)

Please select from one or more of these genomes: (required) Pseudomonas aeruginosa PAO1 Pseudomonas putida KT2440 Pseudomonas aeruginosa PA14 Pseudomonas putida F1 Pseudomonas aeruginosa PA7 Pseudomonas stutzeri A1501 Pseudomonas entomophila L48 Pseudomonas syringae B728a Pseudomonas fluorescens Pf-5 Pseudomonas syringae DC3000 Pseudomonas fluorescens PfO-1 Pseudomonas syringae phaseolicola 1448A Pseudomonas mendocina ymp

All categories Adherence Antimicrobial activity Antiphagocytosis Biosurfactant Iron uptake Lipase Protease Quorum sensing systems Regulation Secretion system Toxin

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Browse by Subcellular Localization

Please select from one or more of these genomes: (required) Pseudomonas aeruginosa PAO1 Pseudomonas putida KT2440 Pseudomonas aeruginosa PA14 Pseudomonas putida F1 Pseudomonas aeruginosa LESB58 Pseudomonas putida W619 Pseudomonas aeruginosa PA7 Pseudomonas stutzeri A1501 Pseudomonas entomophila L48 Pseudomonas syringae B728a Pseudomonas fluorescens Pf-5 Pseudomonassyringae DC3000 Pseudomonasfluorescens PfO-1 Pseudomonas syringae phaseolicola 1448A Pseudomonas mendocina ymp

Cytoplasmic Cytoplasmic membrane Periplasmic Outer Membrane Extracellular Unknown Unknown (This protein may have multiple localization sites)