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Pseudomonas aeruginosa PAO1 Summary
Pseudomonas aeruginosa PAO1 Summary

Organism Name Pseudomonas aeruginosa PAO1 , sub-strain PAO1-UW
Project status complete
GC Content 66.6%
Lab
City Melbourne
Country Australia
Origin Wound
Year 1955
Whole Genome Summary
Feature Type Number of features Percentage
CDS 5576 34.55%
gene 5688 35.25%
intergenic 4758 29.49%
ncRNA 35 0.22%
pseudogene 5 0.04%
rRNA 13 0.09%
tRNA 63 0.4%
tmRNA 1 0.01%

Chromosome/Plasmid Summary
Pseudomonas aeruginosa PAO1 chromosome, complete genome.
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Subcellular Localization
(whole genome)
Localization Number of proteins Percentage Download
No localization assigned and computational localization prediction using PSORTB not performed 7 0.1%
Cytoplasmic 2611 36.41%
Host Associated 10 0.14%
T3SS 4 0.06%
Outer Membrane Vesicle 338 4.72%
Cytoplasmic Membrane 1301 18.14%
Periplasmic 209 2.92%
Outer Membrane 191 2.67%
Extracellular 90 1.26%
Unknown 1181 16.47%
Unknown (This protein may have multiple localization sites) 139 1.94%
Flagellar 18 0.26%
Fimbrial 6 0.09%

Subcellular Localization
(by chromosome/plasmid)
Pseudomonas aeruginosa PAO1 chromosome, complete genome.
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Genomes OnLine (GOLD) Entry Gc00037
Taxonomy ID (NCBI) 208964
Site URL http://www.pseudomonas.com/
date_updated 2014-11-24
date_updated_refseq 13-FEB-2011
Institution PathoGenesis Corporation
GC content 66.6
intergenic 4759
rRNA 13
gene 5679
CDS 5574
tRNA 63
pseudogene 5
ncRNA 29
tmRNA 1
Outer Membrane 189
Localization Unknown 1318
Cytoplasmic Membrane 1301
Periplasmic 209
Flagellar 18
Outer Membrane Vesicle 338
Cytoplasmic 2611
Fimbrial 6
Host Associated 6
Extracellular 90
T3SS 4
Intracellular trafficking, secretion, and vesicular transport 175
Defense mechanisms 78
Replication, recombination and repair 138
Energy production and conversion 329
Secondary metabolites biosynthesis, transport and catabolism 161
Chromatin structure and dynamics 3
RNA processing and modification 2
Cell motility 155
Cell wall/membrane/envelope biogenesis 267
Function unknown 519
Translation, ribosomal structure and biogenesis 205
Posttranslational modification, protein turnover, chaperones 200
Transcription 492
Coenzyme transport and metabolism 215
Cell cycle control, cell division, chromosome partitioning 40
Amino acid transport and metabolism 498
Carbohydrate transport and metabolism 230
General function prediction only 633
Nucleotide transport and metabolism 108
Lipid transport and metabolism 235
Inorganic ion transport and metabolism 308
Signal transduction mechanisms 344
PseudoCyc PseudoCyc View
BLAST
Database:
Pseudomonas aeruginosa PAO1
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Database:
Pseudomonas aeruginosa PAO1
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Strain:
Pseudomonas aeruginosa PAO1
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Genomic Islands Using IslandViewer Pseudomonas aeruginosa PAO1 chromosome, complete genome.

Expression Data

Pseudomonas aeruginosa PAO1
Link Database Experiment Title Analysis Type Samples References
GSE7266 NCBI GEO Gene expression of Pseudomonas aeruginosa on reverse osmosis membranes Expression profiling by array GSM175247 - Suspended Pseudomonas aeruginosa in RO unit

GSM175248 - Biofilm cells grown on RO membrane

GSE12678 NCBI GEO Identification of genes involved with Pseudomonas aeruginosa biofilm antibiotic tolerance by Microarray analysis Expression profiling by array GSM318400 - 0hr ctrl, baseline, rep3

GSM318407 - 12hr+cipro, rep1

GSM318398 - 0hr ctrl, baseline, rep1

GSM318401 - 12hr ctrl, rep1

GSM318404 - 12hr+tobra, rep1

GSM318399 - 0hr ctrl, baseline, rep2

GSM318402 - 12hr ctrl, rep2

GSM318405 - 12hr+tobra, rep2

GSM318408 - 12hr+cipro, rep2

GSM318403 - 12hr ctrl, rep3

GSM318406 - 12hr+tobra, rep3

GSM318409 - 12hr+cipro, rep3

GSE11544 NCBI GEO Expression data from Pseudomonas aeruginosa infiltrated into resistant and susceptible cultivars of Nicotiana tabacum. Expression profiling by array GSM290748 - Xanthi PAO1, rep2

GSM290751 - Samsung PAO1, rep2

GSM290749 - Xanthi PAO1, rep3

GSM290752 - Samsung PAO1, rep3

GSM290747 - Xanthi PAO1, rep1

GSM290750 - Samsung PAO1, rep1

PMID: 18641163
GSE26931 NCBI GEO Mixed Culture Gene Expression of E. coli and Pseudomonas aeruginosa Expression profiling by array GSM663159 - E. coli ZK126 pure culture rep1

GSM663157 - E. coli ZK126 and P. aeruginosa culture rep1

GSM663160 - E. coli ZK126 pure culture rep2

GSM663163 - P. aeruginosa pure culture rep1

GSM663158 - E. coli ZK126 and P. aeruginosa culture rep2

GSM663161 - P. aeruginosa and E. coli ZK126 culture rep1

GSM663164 - P. aeruginosa pure culture rep2

GSM663162 - P. aeruginosa and E. coli ZK126 culture rep2

PMID: 22101045
GSE37826 NCBI GEO Human cerebrospinal fluid autoantibody lipid microarray profiling (Fig. 2C) Other GSM928506 - 01-180

GSM928509 - 01-189

GSM928516 - 02-014

GSM928519 - 02-019

GSM928522 - 02-027

GSM928525 - 02-030

GSM928504 - 01-182

GSM928507 - 01-181

GSM928510 - 01-190

GSM928513 - 01-185

GSM928520 - 02-023

GSM928523 - 02-022

GSM928526 - 02-036

GSM928508 - 01-183

GSM928511 - 02-012

GSM928514 - 02-001

GSM928517 - 02-015

GSM928524 - 02-028

GSM928527 - 02-035

GSM928505 - 01-188

GSM928512 - 01-184

GSM928515 - 02-013

GSM928518 - 02-016

GSM928521 - 02-025

GSM928528 - 02-041

PMID: 22674551
GSE6769 NCBI GEO Expression data from Pseudomonas aeruginosa (wild type and lasRrhlR mutant strains) exposed to human neutrophils Expression profiling by array GSM156157 - WT1+PMNs

GSM156173 - RR1 Control

GSM156154 - WT2+PMNs

GSM156158 - WT1 Control

GSM156174 - RR2 + PMNs

GSM156155 - WT3 Control

GSM156153 - WT2 Control

GSM156156 - WT3+PMNs

GSM156172 - RR1 + PMNs

GSM156175 - RR2 Control

PMID: 19643762
GSE33241 NCBI GEO Novel targets of the CbrAB/Crc carbon catabolite control system revealed by transcript abundance in Pseudomonas aeruginosa [BSM] Expression profiling by array GSM822690 - PAO1 wild type strain_B [BSM]

GSM822693 - PAO66711 (delta cbrB) strain_A [BSM]

GSM822691 - PAO6673 (delta crc) strain_A [BSM]

GSM822694 - PAO66711 (delta cbrB) strain_B [BSM]

GSM822689 - PAO1 wild type strain_A [BSM]

GSM822696 - PAO6679 (delta crcZ) strain_B [BSM]

GSM822692 - PAO6673 (delta crc) strain_B [BSM]

GSM822695 - PAO6679 (delta crcZ) strain_A [BSM]

GSE3090 NCBI GEO Oxidative stress effect on pyocin expression Expression profiling by array GSM68692 - Pseudomonas aeruginosa_no treatment_ 20min_replicate1

GSM68693 - Pseudomonas aeruginosa_no treatment_ 20min_replicate2

GSM68694 - Pseudomonas aeruginosa_no treatment_ 20min_replicate3

GSM68695 - Pseudomonas aeruginosa_no treatment_ 20min_replicate4

GSM68687 - Pseudomonas aeruginosa_hydrogen peroxide_ 20min_replicate1

GSM68688 - Pseudomonas aeruginosa_hydrogen peroxide_ 20min_replicate2

GSM68689 - Pseudomonas aeruginosa_hydrogen peroxide_ 20min_replicate3

GSM68690 - Pseudomonas aeruginosa_hydrogen peroxide_ 20min_replicate4

GSM68691 - Pseudomonas aeruginosa_hydrogen peroxide_ 20min_replicate5

PMID: 16150148
GSE24262 NCBI GEO PA14_mexR vs. wildtype planktonic cells in minimal medium with C-30 Expression profiling by array GSM596626 - PA14-WT QSM C30 2hr 37C planktonic cell

GSM596819 - PA14-mexR QSM C30 2hr 37C planktonic cell

GSE13252 NCBI GEO Pseduomonas aeruginosa PAO1 response to subinhibitory colistin Expression profiling by array GSM334311 - PAO1 treated with subMIC colistin Replicate 1

GSM334313 - PAO1 treated with subMIC colistin Replicate 2

GSM334314 - PAO1 treated with subMIC colistin Replicate 3

GSM334310 - PAO1 untreated Replicate 1

GSM334312 - PAO1 untreated Replicate 2

GSM334315 - PAO1 untreated Replicate 3

PMID: 19477905
GSE37664 NCBI GEO Human cerebrospinal fluid autoantibody lipid microarray profiling (Fig. 1A) Other GSM925134 - 02-091

GSM925137 - 01-055

GSM925140 - 01-093

GSM925143 - 01-109

GSM925150 - 01-142

GSM925153 - 01-168

GSM925156 - 01-182

GSM925159 - 01-185

GSM925166 - 02-099

GSM925169 - 02-013

GSM925172 - 02-016

GSM925179 - 02-104

GSM925182 - 02-028

GSM925185 - 02-035

GSM925188 - 02-041

GSM925133 - 02-089

GSM925136 - 01-008

GSM925139 - 01-085

GSM925146 - 01-123

GSM925149 - 01-136

GSM925152 - 01-166

GSM925155 - 01-181

GSM925162 - 01-190

GSM925165 - 02-096

GSM925168 - 02-012

GSM925175 - 02-022

GSM925178 - 02-100

GSM925181 - 02-027

GSM925184 - 02-033

GSM925132 - 02-088

GSM925135 - 01-001

GSM925142 - 01-107

GSM925145 - 01-120

GSM925148 - 01-133

GSM925151 - 01-150

GSM925158 - 01-184

GSM925161 - 01-189

GSM925164 - 02-095

GSM925167 - 02-010

GSM925171 - 02-015

GSM925174 - 02-019

GSM925177 - 02-024

GSM925180 - 02-025

GSM925187 - 02-040

GSM925190 - 02-110

GSM925138 - 01-073

GSM925141 - 01-103

GSM925144 - 01-119

GSM925147 - 01-131

GSM925154 - 01-180

GSM925157 - 01-183

GSM925160 - 01-188

GSM925163 - 02-001

GSM925170 - 02-014

GSM925173 - 02-017

GSM925176 - 02-023

GSM925183 - 02-030

GSM925186 - 02-036

GSM925189 - 02-107

PMID: 22674551
GSE3090 NCBI GEO Microarray Analysis of Pseudomonas aeruginosa Reveals Induction of Pyocin Genes in Response to Hydrogen Peroxide Expression profiling by array GSM68689 - Pseudomonas aeruginosa_hydrogen peroxide_ 20min_replicate3

GSM68692 - Pseudomonas aeruginosa_no treatment_ 20min_replicate1

GSM68695 - Pseudomonas aeruginosa_no treatment_ 20min_replicate4

GSM68690 - Pseudomonas aeruginosa_hydrogen peroxide_ 20min_replicate4

GSM68693 - Pseudomonas aeruginosa_no treatment_ 20min_replicate2

GSM68687 - Pseudomonas aeruginosa_hydrogen peroxide_ 20min_replicate1

GSM68694 - Pseudomonas aeruginosa_no treatment_ 20min_replicate3

GSM68688 - Pseudomonas aeruginosa_hydrogen peroxide_ 20min_replicate2

GSM68691 - Pseudomonas aeruginosa_hydrogen peroxide_ 20min_replicate5

PMID: 16150148
GSE3836 NCBI GEO Pseudomonas aeruginosa response to 3,4-(di)hydroxy-heptyl-quinoline: time course Expression profiling by array GSM87345 - P.aeruginosa_-PQS_5h_1

GSM87346 - P.aeruginosa_-PQS_5h_2

GSM87347 - P.aeruginosa_+40µMPQS_5h_1

GSM87348 - P.aeruginosa_+40µMPQS_5h_2

GSM87349 - P.aeruginosa_-PQS_11h_1

GSM87350 - P.aeruginosa_-PQS_11h_2

GSM87352 - P.aeruginosa_+40µMPQS_11h_1

GSM87353 - P.aeruginosa_+40µMPQS_11h_2

GSM87354 - P.aeruginosa_-PQS_20h_1

GSM87355 - P.aeruginosa_-PQS_20h_2

GSM87356 - P.aeruginosa_+40µMPQS_20h_1

GSM87357 - P.aeruginosa_+40µMPQS_20h_2

PMID: 16872396
GSE5887 NCBI GEO Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere Expression profiling by array GSM136932 - PAO1 on poplar root 48 hr

GSM136938 - Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose

GSM136936 - Poplar in 1 x hrp + 0.25 % sucrose no bacteria

GSM136934 - PAO1 on glasswool 1 x hrp + 0.25 % sucrose 48 hr biofilm cells

GSE32032 NCBI GEO Role of ndvB on gene expression in Pseudomonas aeruginosa Expression profiling by array GSM794228 - Wild-type biofilm; biological replicate 3

GSM794231 - ndvB knockout biofilm; biological replicate 3

GSM794226 - Wild-type biofilm; biological replicate 1

GSM794229 - ndvB knockout biofilm; biological replicate 1

GSM794230 - ndvB knockout biofilm; biological replicate 2

GSM794227 - Wild-type biofilm; biological replicate 2

PMID: 22505683
GSE34836 NCBI GEO Effects of vitamin B12 on the gene expression of PAO1 under anaerobic growth conditions Expression profiling by array GSM856032 - PAO1_LBN+B12

GSM856031 - PAO1_LBN

PMID: 22371376
GSE28081 NCBI GEO Expression pattern of Pseudomonas aeruginosa biofilm-residing bacteria exposed to gentamicin or surface acoustic waves or gentamicin and surface acoustic waves combined Expression profiling by array GSM694307 - control, biological rep 2

GSM694310 - SAW, biological rep 1

GSM694313 - GmSAW, biological rep 2

GSM694311 - SAW, biological rep 2

GSM694306 - control, biological rep 1

GSM694309 - Gm, biological rep 2

GSM694308 - Gm, biological rep 1

GSM694312 - GmSAW, biological rep 1

GSE7402 NCBI GEO Toxicogenomic analysis of sodium sodium hypochlorite antimicrobial mechanisms in Pseudomonas aeruginosa Expression profiling by array GSM178567 - Pseudomonas aeruginosa_sodium hypochlorite_replicate4

GSM68694 - Pseudomonas aeruginosa_no treatment_ 20min_replicate3

GSM178564 - Pseudomonas aeruginosa_sodium hypochlorite_replicate1

GSM68692 - Pseudomonas aeruginosa_no treatment_ 20min_replicate1

GSM68695 - Pseudomonas aeruginosa_no treatment_ 20min_replicate4

GSM178566 - Pseudomonas aeruginosa_sodium hypochlorite_replicate3

GSM68693 - Pseudomonas aeruginosa_no treatment_ 20min_replicate2

GSM178565 - Pseudomonas aeruginosa_sodium hypochlorite_replicate2

GSM178568 - Pseudomonas aeruginosa_sodium hypochlorite_replicate5

PMID: 17624526
GSE15217 NCBI GEO Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1. Expression profiling by genome tiling array GSM380020 - PAO1(pCAR1)_CustomExpress IncP-7 plasmid pCAR1 Tiling Array

GSM380027 - PAO1_Pseudomonas aeruginosa PAO1 chromosome array

GSM380030 - Pf0-1(pCAR1)_Pseudomonas fluorescens Pf0-1 chromosome array

GSM380021 - Pf0-1(pCAR1)_CustomExpress IncP-7 plasmid pCAR1 Tiling Array

GSM380028 - PAO1(pCAR1)_Pseudomonas aeruginosa PAO1 chromosome array

GSM380019 - KT2440(pCAR1)_CustomExpress IncP-7 plasmid pCAR1 Tiling Array

GSM380025 - KT2440_Pseudomonas putida KT2440 chromosome Array

GSM380026 - KT2440(pCAR1)_Pseudomonas putida KT2440 chromosome Array

GSM380029 - Pf0-1_Pseudomonas fluorescens Pf0-1 chromosome array

PMID: 19930443
GSE37830 NCBI GEO Human cerebrospinal fluid autoantibody lipid microarray profiling Other GSM925135 - 01-001

GSM925138 - 01-073

GSM925141 - 01-103

GSM925144 - 01-119

GSM925151 - 01-150

GSM925154 - 01-180

GSM925157 - 01-183

GSM925160 - 01-188

GSM925167 - 02-010

GSM925170 - 02-014

GSM925173 - 02-017

GSM925180 - 02-025

GSM925183 - 02-030

GSM925186 - 02-036

GSM925189 - 02-107

GSM925286 - 01-184

GSM925289 - 01-185

GSM925292 - 02-012

GSM925295 - 02-023

GSM925302 - 02-028

GSM928505 - 01-188

GSM928512 - 01-184

GSM928515 - 02-013

GSM928518 - 02-016

GSM928521 - 02-025

GSM928528 - 02-041

GSM925132 - 02-088

GSM925139 - 01-085

GSM925142 - 01-107

GSM925145 - 01-120

GSM925148 - 01-133

GSM925155 - 01-181

GSM925158 - 01-184

GSM925161 - 01-189

GSM925164 - 02-095

GSM925168 - 02-012

GSM925171 - 02-015

GSM925174 - 02-019

GSM925177 - 02-024

GSM925184 - 02-033

GSM925187 - 02-040

GSM925190 - 02-110

GSM925283 - 01-180

GSM925290 - 02-001

GSM925293 - 02-013

GSM925296 - 02-025

GSM925299 - 02-036

GSM928506 - 01-180

GSM928509 - 01-189

GSM928516 - 02-014

GSM928519 - 02-019

GSM928522 - 02-027

GSM928525 - 02-030

GSM925133 - 02-089

GSM925136 - 01-008

GSM925143 - 01-109

GSM925146 - 01-123

GSM925149 - 01-136

GSM925152 - 01-166

GSM925159 - 01-185

GSM925162 - 01-190

GSM925165 - 02-096

GSM925172 - 02-016

GSM925175 - 02-022

GSM925178 - 02-100

GSM925181 - 02-027

GSM925188 - 02-041

GSM925281 - 01-001

GSM925284 - 01-181

GSM925287 - 01-189

GSM925294 - 01-168

GSM925297 - 02-027

GSM925300 - 02-040

GSM925303 - 02-030

GSM928504 - 01-182

GSM928507 - 01-181

GSM928510 - 01-190

GSM928513 - 01-185

GSM928520 - 02-023

GSM928523 - 02-022

GSM928526 - 02-036

GSM925134 - 02-091

GSM925137 - 01-055

GSM925140 - 01-093

GSM925147 - 01-131

GSM925150 - 01-142

GSM925153 - 01-168

GSM925156 - 01-182

GSM925163 - 02-001

GSM925166 - 02-099

GSM925169 - 02-013

GSM925176 - 02-023

GSM925179 - 02-104

GSM925182 - 02-028

GSM925185 - 02-035

GSM925282 - 01-008

GSM925285 - 01-182

GSM925288 - 01-190

GSM925291 - 02-010

GSM925298 - 02-016

GSM925301 - 02-041

GSM928508 - 01-183

GSM928511 - 02-012

GSM928514 - 02-001

GSM928517 - 02-015

GSM928524 - 02-028

GSM928527 - 02-035

GSM928646 - 02-033

PMID: 22674551
GSE40461 NCBI GEO PAHM4 vs PAO1 37C LB Expression profiling by array GSM994496 - PAO1 LB-37C tech01

GSM994499 - PAHM4 LB-37C tech01

GSM994498 - PAO1 LB-37C tech03

GSM994501 - PAHM4 LB-37C tech03

GSM994497 - PAO1 LB-37C tech02

GSM994500 - PAHM4 LB-37C tech02

GSE10065 NCBI GEO P. aeruginosa and indole and 7-hydroxyindole Expression profiling by array GSM177216 - LB 7HI 7h biofilm cells

GSM177219 - LB DMF 7h suspension cells

GSM307134 - LB 2nd DMF 7h biofilm cells run with IAA sample

GSM307135 - LB 1 mM IAA 7 h biofilm cells run with 2nd DMF

GSM177218 - LB DMF 7h biofilm cells

GSM254432 - LB indole 7 h biofilm cells

GSE28568 NCBI GEO Alterations of RNA maps of IncP-7 plasmid pCAR1 in various Pseudomonas bacteria. Expression profiling by genome tiling array GSM707305 - CA10 (pCAR1)

GSM707308 - HS01 (pCAR1)

GSM707306 - PAO1 (pCAR1)

GSM707309 - JCM 2778 (pCAR1)

GSM707304 - KT2440 (pCAR1)

GSM707307 - Pf0-1 (pCAR1)

PMID: 21708189
GSE13326 NCBI GEO Microarray for suspension cells of PA14 WT with and without NE (50 uM and 500 uM) for 7 h Expression profiling by array GSM335183 - 7 hr 500 uM NE suspension cells

GSM335182 - 7 hr control (for 500 uM NE suspension cells)

GSM366977 - 7 hr 50 uM NE suspension cells

GSM366976 - 7 hr control (for 50 uM NE suspension cells)

PMID: 19517106
GSE35248 NCBI GEO Analysis of the Pseudomonas aeruginosa regulon controlled by the sensor kinase KinB and sigma factor RpoN Expression profiling by array GSM864520 - PAO1 kinB rpoN-3

GSM864517 - PAO1 kinB-2

GSM864516 - PAO1 kinB-1

GSM864519 - PAO1 kinB rpoN-1

GSM864518 - PAO1 kinB-3

GSM864521 - PAO1 kinB rpoN-5

PMID: 22210761
GSE30967 NCBI GEO Genome wide transcriptional analysis of P. aeruginosa PAO1, response to phosphate limitation Expression profiling by array GSM767702 - PAO1, NGM Pi 25 mM_6

GSM767705 - PAO1, NGM Pi <0.1 mM_9

GSM767701 - PAO1, NGM Pi 25 mM_5

GSM767704 - PAO1, NGM Pi <0.1 mM_8

GSM767700 - PAO1, NGM Pi 25 mM_4

GSM767703 - PAO1, NGM Pi <0.1 mM_7

PMID: 19369215
GSE22684 NCBI GEO Transcriptional and proteomic response of Pseudomonas aeruginosa PAO1 to spaceflight conditions involves Hfq regulation and reveals a role for oxygen Expression profiling by array GSM560755 - Ground Sample - biological replicate 2

GSM560758 - Space flight Sample - biological replicate 2

GSM560756 - Ground Sample - biological replicate 3

GSM560759 - Space flight Sample - biological replicate 3

GSM424833 - RWV vertical - biological replicate 2

GSM424832 - RWV vertical - biological replicate 1

GSM560754 - Ground Sample - biological replicate 1

GSM560757 - Space flight Sample - biological replicate 1

PMID: 21169425
GSE36161 NCBI GEO Temperature dependent gene expression levels at 28°C and 37°C for Pseudomonas aeruginosa PAO1 Expression profiling by array GSM881979 - PA01_cell_28℃_rep2

GSM881982 - PA01_cell_37℃_rep2

GSM881978 - PA01_cell_28℃_rep1

GSM881980 - PA01_cell_28℃_rep3

GSM881983 - PA01_cell_37℃_rep3

GSM881981 - PA01_cell_37℃_rep1

GSE11051 NCBI GEO Transcription of ectopic DNA in E.coli Expression profiling by genome tiling array GSM279149 - E.coli-DH10B_H.influenzae-cloneQtransformed_v1

GSM279162 - E.coli-DH10B_P.aeruginosa-cloneE6-transformed_v1

GSM279139 - Hinfluenzae RNA - native state - v1.0

GSM279161 - E.coli-DH10B_P.aeruginosa-cloneE5-transformed_v1

GSM279154 - E.coli-DH10B_H.influenzae-cloneS-transformed_v1

GSM279164 - E.coli-DH10B_Human-BAC clone P8 transformed_v1

GSM279137 - E.coli-DH10B_nativeState_v1

GSM279144 - Pseudomonas aeruginosa native cells - RNA extract

GSM279160 - E.coli-DH10B_P.aeruginosa-cloneE4-transformed_v1

GSM279163 - E.coli-DH10B_H.influenzae-Pooled BAC clones from tiling path-transformed individually_v1

PMID: 18701636
GSE35632 NCBI GEO Expression of RpoN molecular roadblock in Pseudomonas aeruginosa PAO1 in rich media Expression profiling by array GSM871965 - PAO1-empty-3

GSM871968 - PAO1-RpoN-2

GSM871971 - PAO6359-empty-1

GSM871978 - PAO6359-RpoN-4

GSM871964 - PAO1-empty-2

GSM871967 - PAO1-RpoN-1

GSM871970 - PAO1-RpoN-4

GSM871974 - PAO6359-empty-4

GSM871977 - PAO6359-RpoN-3

GSM871963 - PAO1-empty-1

GSM871966 - PAO1-empty-4

GSM871973 - PAO6359-empty-3

GSM871976 - PAO6359-RpoN-2

GSM871969 - PAO1-RpoN-3

GSM871972 - PAO6359-empty-2

GSM871975 - PAO6359-RpoN-1

GSE16970 NCBI GEO Response of Pseudomonas aeruginosa PAO1 to low shear modeled microgravity Expression profiling by array GSM424832 - RWV vertical - biological replicate 1

GSM424835 - RPM - biological replicate 2

GSM424829 - RWV horizontal - biological replicate 1

GSM424836 - RPM - biological replicate 3

GSM424831 - RWV horizontal - biological replicate 3

GSM424834 - RPM - biological replicate 1

GSM424830 - RWV horizontal - biological replicate 2

GSM424833 - RWV vertical - biological replicate 2

PMID: 20236169
GSE3836 NCBI GEO Transcriptome analysis of PAO1 cultures supplemented with PQS Expression profiling by array GSM87347 - P.aeruginosa_+40µMPQS_5h_1

GSM87350 - P.aeruginosa_-PQS_11h_2

GSM87353 - P.aeruginosa_+40µMPQS_11h_2

GSM87356 - P.aeruginosa_+40µMPQS_20h_1

GSM87346 - P.aeruginosa_-PQS_5h_2

GSM87349 - P.aeruginosa_-PQS_11h_1

GSM87352 - P.aeruginosa_+40µMPQS_11h_1

GSM87354 - P.aeruginosa_-PQS_20h_1

GSM87357 - P.aeruginosa_+40µMPQS_20h_2

GSM87345 - P.aeruginosa_-PQS_5h_1

GSM87348 - P.aeruginosa_+40µMPQS_5h_2

GSM87355 - P.aeruginosa_-PQS_20h_2

PMID: 16872396
GSE13252 NCBI GEO Pseduomonas aeruginosa PAO1 exposed to subinhibitory colistin Expression profiling by array GSM334311 - PAO1 treated with subMIC colistin Replicate 1

GSM334314 - PAO1 treated with subMIC colistin Replicate 3

GSM334315 - PAO1 untreated Replicate 3

GSM334312 - PAO1 untreated Replicate 2

GSM334310 - PAO1 untreated Replicate 1

GSM334313 - PAO1 treated with subMIC colistin Replicate 2

PMID: 19477905
GSE33245 NCBI GEO Novel targets of the CbrAB/Crc carbon catabolite control system revealed by transcript abundance in Pseudomonas aeruginosa. Expression profiling by array GSM822691 - PAO6673 (delta crc) strain_A [BSM]

GSM822694 - PAO66711 (delta cbrB) strain_B [BSM]

GSM822710 - PAO6673 (delta crc) strain_A [LB]

GSM822713 - PAO66711 (delta cbrB) strain_B [LB]

GSM822692 - PAO6673 (delta crc) strain_B [BSM]

GSM822695 - PAO6679 (delta crcZ) strain_A [BSM]

GSM822708 - PAO1 wild type strain_A [LB]

GSM822711 - PAO6673 (delta crc) strain_B [LB]

GSM822714 - PAO6679 (delta crcZ) strain_A [LB]

GSM822689 - PAO1 wild type strain_A [BSM]

GSM822696 - PAO6679 (delta crcZ) strain_B [BSM]

GSM822712 - PAO66711 (delta cbrB) strain_A [LB]

GSM822715 - PAO6679 (delta crcZ) strain_B [LB]

GSM822690 - PAO1 wild type strain_B [BSM]

GSM822693 - PAO66711 (delta cbrB) strain_A [BSM]

GSM822709 - PAO1 wild type strain_B [LB]

GSE37670 NCBI GEO Human cerebrospinal fluid autoantibody lipid microarray profiling (Fig. 2A) Other GSM925282 - 01-008

GSM925285 - 01-182

GSM925288 - 01-190

GSM925295 - 02-023

GSM925298 - 02-016

GSM925301 - 02-041

GSM928646 - 02-033

GSM925281 - 01-001

GSM925284 - 01-181

GSM925291 - 02-010

GSM925294 - 01-168

GSM925297 - 02-027

GSM925300 - 02-040

GSM925283 - 01-180

GSM925286 - 01-184

GSM925289 - 01-185

GSM925292 - 02-012

GSM925299 - 02-036

GSM925302 - 02-028

GSM925287 - 01-189

GSM925290 - 02-001

GSM925293 - 02-013

GSM925296 - 02-025

GSM925303 - 02-030

PMID: 22674551
GSE26932 NCBI GEO Mixed Culture Gene Expression of E. coli and Pseudomonas aeruginosa grown on defined media with N-acetyl glucosamine Expression profiling by array GSM663166 - E. coli MG1655 and P. aeruginosa culture rep2

GSM663167 - E. coli MG1655 pure culture rep1

GSM663170 - P. aeruginosa pure culture rep1

GSM663165 - E. coli MG1655 and P. aeruginosa culture rep1

GSM663168 - P. aeruginosa and E. coli MG1655 culture rep1

GSM663169 - P. aeruginosa and E. coli MG1655 culture rep2

PMID: 22101045
GSE29789 NCBI GEO Genome wide transcriptional analysis of P. aeruginosa PAO1 response to pH at 25 mM phosphate background Expression profiling by array GSM738262 - PAO1, pH6.0, rep2

GSM738265 - PAO1, pH7.5, rep2

GSM738261 - PAO1, pH6.0, rep1

GSM738264 - PAO1, pH7.5, rep1

GSM738263 - PAO1, pH6.0, rep3

GSM738266 - PAO1, pH7.5, rep3

PMID: 21943078
GSE33244 NCBI GEO Novel targets of the CbrAB/Crc carbon catabolite control system revealed by transcript abundance in Pseudomonas aeruginosa [LB] Expression profiling by array GSM822713 - PAO66711 (delta cbrB) strain_B [LB]

GSM822710 - PAO6673 (delta crc) strain_A [LB]

GSM822708 - PAO1 wild type strain_A [LB]

GSM822711 - PAO6673 (delta crc) strain_B [LB]

GSM822714 - PAO6679 (delta crcZ) strain_A [LB]

GSM822709 - PAO1 wild type strain_B [LB]

GSM822712 - PAO66711 (delta cbrB) strain_A [LB]

GSM822715 - PAO6679 (delta crcZ) strain_B [LB]

GSE29946 NCBI GEO Genome wide transcriptional analysis of P. aeruginosa PAO1 response to kappa-opioid U-50,488 in poor nutrient medium Expression profiling by array GSM741203 - Pi 0.1 [Olga21]

GSM741206 - PI25 + U200 [Olga31]

GSM741209 - Pi0.1+U200 [Olga34]

GSM741205 - Pi 0.1 [Olga23]

GSM741212 - Pi25 [Olga37]

GSM741208 - PI25 + U200 [Olga33]

GSM741211 - Pi0.1+U200 [Olga36]

GSM741214 - Pi25 [Olga39]

GSM741204 - Pi 0.1 [Olga22]

GSM741207 - PI25 + U200 [Olga32]

GSM741210 - Pi0.1+U200 [Olga35]

GSM741213 - Pi25 [Olga38]

PMID: 22514685
GSE28152 NCBI GEO Pseudomonas aeruginosa gene expression in artificial sputum medium using a broad capture array designated the PANarray Expression profiling by array GSM697399 - P. aeruginosa intermittent infection isolate 5Mel replicate 1

GSM697395 - P. aeruginosa chronic infection isolate AES-1M replicate 1

GSM697398 - P. aeruginosa early infection isolate 1Mel replicate 2

GSM697394 - P. aeruginosa early infection isolate AES-1R replicate 2

GSM697397 - P. aeruginosa early infection isolate 1Mel replicate 1

GSM697400 - P. aeruginosa intermittent infection isolate 5Mel replicate 2

GSM697393 - P. aeruginosa early infection isolate AES-1R replicate 1

GSM697396 - P. aeruginosa chronic infection isolate AES-1M replicate 2

PMID: 21935417
GSE30021 NCBI GEO Expression data of Pseudomonas aeruginosa cells in planktonic or biofilm mode of growth Expression profiling by array GSM743005 - planktonic cells 24 hours replicate b

GSM743008 - sessile cells 24 hours replicate b

GSM743002 - planktonic cells 4 hours replicate b

GSM743009 - sessile cells 24 hours replicate c

GSM743003 - planktonic cells 4 hours replicate c

GSM743006 - planktonic cells 24 hours replicate c

GSM743001 - planktonic cells 4 hours replicate a

GSM743004 - planktonic cells 24 hours replicate a

GSM743007 - sessile cells 24 hours replicate a

GSE18594 NCBI GEO P. aeruginosa PA14 gene expression in artificial sputum medium (ASMDM) Expression profiling by array GSM462062 - Stationary phase gene expression profile of P. aeruginosa PA14 grown in ASMDM (replicateB)

GSM462061 - Stationary phase gene expression profile of P. aeruginosa PA14 grown in ASMDM (replicateA)

GSM462354 - Gene expression profile of P. aeruginosa PA14 grown to early log phase in ASMDM (replicateA)

GSM462063 - Stationary phase gene expression profile of P. aeruginosa PA14 grown in Luria broth(replicateA)

GSM462352 - Gene expression profile of P. aeruginosa PA14 grown to early log phase in MOPS-Glucose(replicateA)

GSM462355 - Gene expression profile of P. aeruginosa PA14 grown to early log phase in ASMDM (replicateB)

GSM462064 - Stationary phase gene expression profile of P. aeruginosa PA14 grown in Luria Broth (replicateB)

GSM462353 - Gene expression profile of P. aeruginosa PA14 grown to early log phase in MOPS-Glucose(replicateB)

PMID: 20522626
GSE24036 NCBI GEO The effect of 2-AA on P. aeruginosa PA14 and its mutants Expression profiling by array GSM591603 - 2-AA treated PA14 cells in OD2 replicate 1

GSM591623 - 2-AA treated PA14 cells in OD2 replicate 3

GSM597217 - topA + 2AA replicate 2

GSM597220 - -HAQs - 2AA replicate 2

GSM597329 - -HAQs + 2AA replicate 1

GSM591601 - PA14 control of 2-AA treated cells in OD2 replicate 2

GSM591627 - topA mutant OD 2.0 replicate 3

GSM597221 - -HAQs - 2AA replicate 3

GSM597330 - -HAQs + 2AA replicate 2

GSM591496 - PA14 control of 2-AA treated cells in OD2 replicate 1

GSM591602 - PA14 control of 2-AA treated cells in OD2 replicate 3

GSM591624 - topA mutant OD 2.0 replicate 1

GSM597218 - topA + 2AA replicate 3

GSM597331 - -HAQs + 2AA replicate 3

GSM591622 - 2-AA treated PA14 cells in OD2 replicate 2

GSM591625 - topA mutant OD 2.0 replicate 2

GSM597216 - topA + 2AA replicate 1

GSM597219 - -HAQs - 2AA replicate 1

GSE26518 NCBI GEO Temperature dependent gene expression levels at 28°C and 37°C for rhizophere Rhizosphere Originating Biocontrol Strain Pseudomonas aeruginosa M18 Expression profiling by array GSM651919 - M18_cell_37℃_rep2

GSM651916 - M18_cell_28℃_rep2

GSM651917 - M18_cell_28℃_rep3

GSM651920 - M18_cell_37℃_rep3

GSM651915 - M18_cell_28℃_rep1

GSM651918 - M18_cell_37℃_rep1

PMID: 21884571
GSE24038 NCBI GEO topA mutant of P. aeruginosa PA14 Expression profiling by array GSM591601 - PA14 control of 2-AA treated cells in OD2 replicate 2

GSM591624 - topA mutant OD 2.0 replicate 1

GSM591627 - topA mutant OD 2.0 replicate 3

GSM591496 - PA14 control of 2-AA treated cells in OD2 replicate 1

GSM591602 - PA14 control of 2-AA treated cells in OD2 replicate 3

GSM591625 - topA mutant OD 2.0 replicate 2

GSE8953 NCBI GEO Investigations of the effects of subMIC antibiotics on the P. aeruginosa transcriptome Expression profiling by array GSM226897 - PAO1 untreated reference PA_ref3

GSM277288 - PAO1 treated with ceftazidime (0.25 microgram pr. mL) (rep B)

GSM226891 - PAO1 treated with azithromycin (8 microgram pr. mL)

GSM226894 - PAO1 treated with ciprofloxacin (0.04 microgram pr. mL)

GSM277286 - PAO1 treated with azithromycin (8 microgram pr. mL) (replicate B)

GSM277289 - PAO1 treated with ciprofloxacin (0.04 microgram pr. mL) (replicate B)

GSM226892 - PAO1 treated with azithromycin (2 microgram pr. mL)

GSM226895 - PAO1 untreated reference PA_ref1

GSM226898 - PAO1 untreated reference PA_ref4

GSM226893 - PAO1 treated with ceftazidime (0.25 microgram pr. mL)

GSM226896 - PAO1 untreated reference PA_ref2

GSM277287 - PAO1 treated with azithromycin (2 microgram pr. mL) (replicate B)

PMID: 18644954
GSE36753 NCBI GEO Effects of (E)-4-bromo-5-(bromomethylene)-3-methylfuran-2(5H)-one (BF8) on P. aeruginosa PAO1 persister cells (three biological replicates) Expression profiling by array GSM900177 - PAO1 persisters treated with BF8 at 1 ug/mL for 1 hour F1

GSM900180 - furanone-free control C2

GSM900178 - furanone-free control C1

GSM900181 - PAO1 persisters treated with BF8 at 1 ug/mL for 1 hour F3

GSM900179 - PAO1 persisters treated with BF8 at 1 ug/mL for 1 hour F2

GSM900182 - furanone-free control C3



Pseudomonas aeruginosa (please see genome summary pages for strain-specific experiments)
Link Database Experiment Title Analysis Type Samples References
GSE5604 NCBI GEO PCP shock of P. aeruginosa Expression profiling by array GSM130789 - PAO1RpoS-_PCP_13hr

GSM130792 - PAO1_PCP_6.5hr

GSM130795 - PAO1_PCP_0hr_B

GSM130798 - PAO1_PCP_26hr_B

GSM130788 - PAO1RpoS-_PCP_6.5hr

GSM130791 - PAO1_PCP_0hr

GSM130794 - PAO1_PCP_26hr

GSM130793 - PAO1_PCP_13hr

GSM130796 - PAO1_PCP_6.5hr_B

GSM130787 - PAO1RpoS-_PCP_0hr

GSM130790 - PAO1RpoS-_PCP_26hr

GSM130797 - PAO1_PCP_13hr_B

PMID: 17526777
GSE25595 NCBI GEO The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal Expression profiling by array GSM629176 - vector_contol_repA

GSM629179 - inducible_phrS_gene_repB

GSM629178 - inducible_phrS_gene_repA

GSM629177 - vector_contol_repB

PMID: 21375594
GSE8083 NCBI GEO PAO1-psrA::Tn expression compared to PAO1 in LB Expression profiling by array GSM199982 - PAO1 LB replicate1

GSM199986 - PAO1-psrA::Tn LB replicate3

GSM199983 - PAO1 LB replicate2

GSM199984 - PAO1-psrA::Tn LB replicate1

GSM199985 - PAO1-psrA::Tn LB replicate2

GSE22164 NCBI GEO Physiology of Pseudomonas aeruginosa in Biofilms Revealed by Comparative Transcriptomic Analysis. Expression profiling by array GSM551148 - 0hr ctrl, baseline, rep2

GSM551151 - 12hr ctrl, rep2

GSM551147 - 0hr ctrl, baseline, rep1

GSM551149 - 0hr ctrl, baseline, rep3

GSM551152 - 12hr ctrl, rep3

GSM551150 - 12hr ctrl, rep1

PMID: 21083928
GSE22665 NCBI GEO Expression data from P. aeruginosa colonizing the Murine GI Tract Expression profiling by array GSM562110 - PAKGIColoniz_2

GSM562113 - PAKH2O_2

GSM562109 - PAKGIColoniz_1

GSM562112 - PAKH2O_1

GSM562114 - PAKH2O_3

GSM562111 - PAKGIColoniz_3

PMID: 21170272
GSE33275 NCBI GEO Gene expression in P. aeruginosa cystic fibrosis isolates grown on Nematode Growth Medium Expression profiling by array GSM823342 - Expression profile of P. aeruginosa isolate CJ-1d grown on Nematode Growth Medium (NGM) (replicate B)

GSM823343 - Expression profile of P. aeruginosa isolate CJ-2009a grown on Nematode Growth Medium (NGM) (replicate A)

GSM823346 - Expression profile of P. aeruginosa isolate BBa grown on Nematode Growth Medium (NGM) (replicate B)

GSM823341 - Expression profile of P. aeruginosa isolate CJ-1d grown on Nematode Growth Medium (NGM) (replicate A)

GSM823345 - Expression profile of P. aeruginosa isolate BBa grown on Nematode Growth Medium (NGM) (replicate A)

GSM823348 - Expression profile of P. aeruginosa isolate BB2009a grown on Nematode Growth Medium (NGM) (replicate B)

GSM823344 - Expression profile of P. aeruginosa isolate CJ-2009a grown on Nematode Growth Medium (NGM) (replicate B)

GSM823347 - Expression profile of P. aeruginosa isolate BB2009a grown on Nematode Growth Medium (NGM) (replicate A)

GSE25481 NCBI GEO Analysis of Pseudomonas aeruginosa evolving in the cystic fibrosis lung uncovers limited evidence that mutator lineages are more genetically variable than non-mutator lineages Genome variation profiling by array GSM625974 - P. aeruginosa isolated from patient I2M1

GSM625977 - P. aeruginosa isolated from patient I4NM

GSM625975 - P. aeruginosa isolated from patient I3M1

GSM625978 - P. aeruginosa isolated from patient M1M

GSM625981 - P. aeruginosa isolated from patient M3M1

GSM625973 - P. aeruginosa isolated from patient I1NM

GSM625980 - P. aeruginosa isolated from patient M3M2

GSM625976 - P. aeruginosa isolated from patient I3M2

GSM625979 - P. aeruginosa isolated from patient M2NM

GSM625982 - PA01 control

PMID: 21930755
GSE4152 NCBI GEO Response to copper stress conditions Expression profiling by array GSM94624 - control for Cu shock treatment rep1

GSM94626 - control for Cu shock treatment rep2

GSM94623 - Cu shock treatment rep1

GSM94625 - Cu shock treatment rep2

GSM94620 - adapted Cu treatment control rep1

GSM94622 - adapted Cu treatment control rep2

GSM94619 - adapted Cu treatment rep1

GSM94621 - adapted Cu treatment rep2

PMID: 17015663
GSE7968 NCBI GEO P. aeruginosa PAO1 WT and PA2663 biofilm cells Expression profiling by array GSM197237 - P aeruginosa PAO1 WT UW LB biofilm 7 h 30C

GSM197238 - PA2663 UW LB Biofilm cells 7 h

GSE8408 NCBI GEO Pseudomonas aeruginosa cystic fibrosis isolate response to various sulfur sources Expression profiling by array GSM208615 - PAO1 sulfate 1

GSM208616 - PAO1 sulfate 2

GSM208617 - PAO1 sulfate 3

GSM208618 - PAO1 cyclamate 1

GSM208619 - PAO1 cyclamate 2

GSM208620 - PAO1 cyclamate_sulfate 1

GSM208621 - PAO1 cyclamate_sulfate 2

GSM208602 - E601 sulfate 1

GSM208603 - E601 sulfate 2

GSM208604 - E601 sulfate 3

GSM208605 - E601 cyclamate 1

GSM208606 - E601 cyclamate 2

GSM208607 - E601 cyclamate 3

GSM208608 - E601 cyclamate 4

GSM208609 - E601 mucin 1

GSM208610 - E601 mucin 2

GSM208611 - E601 mucin 3

GSM208612 - E601 mucin_cyclamate 1

GSM208613 - E601 mucin_cyclamate 2

GSM208614 - E601 mucin_cyclamate 3

PMID: 17675390
GSE23007 NCBI GEO In-Vivo Expression Profiling of Pseudomonas aeruginosa Infections Reveals Niche-Specific and Strain-Independent Transcriptional Programs Expression profiling by array GSM567668 - Strain p10 isolated from burn wound rep. 1

GSM567671 - Strain p10 isolated from in vitro biofilm rep. 2

GSM567674 - Strain p10 isolated from lettuce infection rep. 1

GSM567681 - Strain p11 isolated from in vitro biofilm rep. 2

GSM567684 - Strain p11 isolated from lettuce infection rep. 1

GSM567687 - Strain p17 isolated from in vitro planktonic culture rep. 2

GSM567690 - Strain p17 isolated from in vitro biofilm rep. 1

GSM567669 - Strain p10 isolated from burn wound rep. 2

GSM567672 - Strain p10 isolated from murine tumor rep. 1

GSM567675 - Strain p10 isolated from lettuce infection rep. 2

GSM567678 - Strain p11 isolated from burn wound rep. 1

GSM567685 - Strain p11 isolated from lettuce infection rep. 2

GSM567688 - Strain p17 isolated from burn wound rep. 1

GSM567691 - Strain p17 isolated from in vitro biofilm rep. 2

GSM567694 - Strain p17 isolated from lettuce infection rep. 1

GSM567667 - Strain p10 isolated from in vitro planktonic culture rep. 2

GSM567670 - Strain p10 isolated from in vitro biofilm rep. 1

GSM567677 - Strain p11 isolated from in vitro planktonic culture rep. 2

GSM567680 - Strain p11 isolated from in vitro biofilm rep. 1

GSM567683 - Strain p11 isolated from murine tumor rep. 2

GSM567686 - Strain p17 isolated from in vitro planktonic culture rep. 1

GSM567693 - Strain p17 isolated from murine tumor rep. 2

GSM567666 - Strain p10 isolated from in vitro planktonic culture rep. 1

GSM567673 - Strain p10 isolated from murine tumor rep. 2

GSM567676 - Strain p11 isolated from in vitro planktonic culture rep. 1

GSM567679 - Strain p11 isolated from burn wound rep. 2

GSM567682 - Strain p11 isolated from murine tumor rep. 1

GSM567689 - Strain p17 isolated from burn wound rep. 2

GSM567692 - Strain p17 isolated from murine tumor rep. 1

GSM567695 - Strain p17 isolated from lettuce infection rep. 2

PMID: 21931663
GSE35286 NCBI GEO Microcolony formation by the opportunistic pathogen Pseudomonas aeruginosa requires pyruvate and pyruvate fermentation. Expression profiling by array GSM865130 - PA5511 rep2

GSM717421 - MS BPao 1 rep3

GSM865129 - PA5511 rep1

GSM717420 - MS BPao 1 rep2

GSM865131 - PA5511 rep3

GSM717419 - MS Pao 1 rep1

GSE6741 NCBI GEO Responses of Pseudomonas aeruginosa to low oxygen Expression profiling by array GSM155240 - cells grown with 0.4% oxygen #1

GSM155243 - cells grown with 2% oxygen #2

GSM155231 - cells grown with 0% oxygen + 100mM nitrate #1

GSM155241 - cells grown with 0.4% oxygen #2

GSM155244 - cells grown with 20% oxygen #1

GSM155239 - cells grown with 0% oxygen + 100mM nitrate #2

GSM155242 - cells grown with 2% oxygen #1

GSM155245 - cells grown with 20% oxygen #2

PMID: 17581126
GSE22999 NCBI GEO Lyngbyoic Acid, a "Tagged" Fatty Acid from a Marine Cyanobacterium, Disrupts Quorum Sensing in Pseudomonas aeruginosa Expression profiling by array GSM567543 - Lyngbyoic acid treated PAO1 (Sample 2)

GSM567542 - EtOH Control PAO1 (Sample 1)

GSM567541 - Lyngbyoic acid treated PAO1 (Sample 1)

GSM567544 - EtOH control PAO1 (Sample 2)

PMID: 21258753
GSE27674 NCBI GEO Protoanemonin: A new natural quorum sensing inhibitor that selectively activates iron starvation response Expression profiling by array GSM685448 - MPAO1 treated with Protoanemonin rep.2

GSM685449 - MPAO1 untreated rep.1

GSM685447 - MPAO1 treated with Protoanemonin rep.1

GSM685450 - MPAO1 untreated rep.2

PMID: 22672701
GSE10604 NCBI GEO Microarray Analysis of Toxicogenomic Effects of Ortho-Phenylphenol on Pseudomonas aeruginosa Expression profiling by array GSM267251 - Pseudomonas aeruginosa_no treatment_0min_replicate4

GSM267254 - Pseudomonas aeruginosa_Ortho-Phenylphenol_20min_replicate3

GSM267257 - Pseudomonas aeruginosa_Ortho-Phenylphenol_60min_replicate2

GSM267250 - Pseudomonas aeruginosa_no treatment_0min_replicate3

GSM267253 - Pseudomonas aeruginosa_Ortho-Phenylphenol_20min_replicate2

GSM267256 - Pseudomonas aeruginosa_Ortho-Phenylphenol_60min_replicate1

GSM267249 - Pseudomonas aeruginosa_no treatment_0min_replicate2

GSM267252 - Pseudomonas aeruginosa_Ortho-Phenylphenol_20min_replicate1

GSM267259 - Pseudomonas aeruginosa_Ortho-Phenylphenol_60min_replicate4

GSM267248 - Pseudomonas aeruginosa_no treatment_0min_replicate1

GSM267255 - Pseudomonas aeruginosa_Ortho-Phenylphenol_20min_replicate4

GSM267258 - Pseudomonas aeruginosa_Ortho-Phenylphenol_60min_replicate3

PMID: 18847467
GSE8408 NCBI GEO Transcriptomic analysis of the sulfate starvation response in Pseudomonas aeruginosa Expression profiling by array GSM208604 - E601 sulfate 3

GSM208611 - E601 mucin 3

GSM208614 - E601 mucin_cyclamate 3

GSM208617 - PAO1 sulfate 3

GSM208602 - E601 sulfate 1

GSM208605 - E601 cyclamate 1

GSM208608 - E601 cyclamate 4

GSM208612 - E601 mucin_cyclamate 1

GSM208615 - PAO1 sulfate 1

GSM208618 - PAO1 cyclamate 1

GSM208621 - PAO1 cyclamate_sulfate 2

GSM208607 - E601 cyclamate 3

GSM208610 - E601 mucin 2

GSM208613 - E601 mucin_cyclamate 2

GSM208620 - PAO1 cyclamate_sulfate 1

GSM208603 - E601 sulfate 2

GSM208606 - E601 cyclamate 2

GSM208609 - E601 mucin 1

GSM208616 - PAO1 sulfate 2

GSM208619 - PAO1 cyclamate 2

PMID: 17675390
GSE5560 NCBI GEO Pseudomonas aeruginosa lasR mutants in young cystic fibrosis patients Expression profiling by array GSM129227 - CF416_lasR_stationary_rep2

PMID: 17493132
GSE2430 NCBI GEO Azithromycin-treated PAO1 vs untreated PAO1 Expression profiling by array GSM45588 - - Azithromycin Chip 1

GSM45591 - + Azithromycin Chip 4

GSM45589 - - Azithromycin Chip 2

GSM45590 - + Azithromycin Chip 3

PMID: 16641435
GSE6122 NCBI GEO Gene expression in PAO1, clonal AES-1 and non-clonal isolates of Pseudomonas aeruginosa Expression profiling by array GSM142286 - Pseudomonas aeruginosa (non-clonal isolate 5) planktonic culture

GSM259818 - Pseudomonas aeruginosa AES-1 (clonal isolate 3) planktonic culture

GSM259821 - Pseudomonas aeruginosa AES-1 (clonal isolate 2) biofilm culture

GSM142285 - Pseudomonas aeruginosa (non-clonal isolate 6) planktonic culture

GSM259819 - Pseudomonas aeruginosa AES-1 (clonal isolate 4) planktonic culture

GSM259822 - Pseudomonas aeruginosa AES-1 (clonal isolate 3) biofilm culture

GSM260365 - Pseudomonas aeruginosa (non-clonal isolate 6) biofilm culture

GSM260368 - Pseudomonas aeruginosa (non-clonal isolate 8) biofilm culture

GSM260371 - Pseudomonas aeruginosa PAO1 planktonic culture

GSM142284 - Pseudomonas aeruginosa (non-clonal isolate 8) planktonic culture

GSM259817 - Pseudomonas aeruginosa AES-1 (clonal isolate 2) planktonic culture

GSM259820 - Pseudomonas aeruginosa AES-1 (clonal isolate 1) biofilm culture

GSM260370 - Pseudomonas aeruginosa (non-clonal isolate 7) biofilm culture

GSM142288 - Pseudomonas aeruginosa (non-clonal isolate 7) planktonic culture

GSM259816 - Pseudomonas aeruginosa AES-1 (clonal isolate 1) planktonic culture

GSM259823 - Pseudomonas aeruginosa AES-1 (clonal isolate 4) biofilm culture

GSM260366 - Pseudomonas aeruginosa (non-clonal isolate 5) biofilm culture

GSM260372 - Pseudomonas aeruginosa PAO1 - biofilm culture

PMID: 19222585
GSE30698 NCBI GEO Adult bovine serum (10%) alters the expression of Pseudomonas aeruginosa genes Expression profiling by array GSM761553 - PAO1_TSBABS_4h_002

GSM761556 - PAO1_TSB_4h_003

GSM761559 - PAO1_TSBABS_8h_005

GSM761562 - PAO1_TSB_8h_006

GSM761557 - PAO1_TSBABS_4h_004

GSM761560 - PAO1_TSB_8h_005

GSM761563 - PAO1_TSBABS_8h_007

GSM761566 - PAO1_TSB_8h_008

GSM761552 - PAO1_TSB_4h_001

GSM761555 - PAO1_TSBABS_4h_003

GSM761558 - PAO1_TSB_4h_004

GSM761565 - PAO1_TSBABS_8h_008

GSM761551 - PAO1_TSBABS_4h_001

GSM761554 - PAO1_TSB_4h_002

GSM761561 - PAO1_TSBABS_8h_006

GSM761564 - PAO1_TSB_8h_007

PMID: 22053004
GSE12738 NCBI GEO Azithromycin effect on Pseudomonas aeruginosa PAO1 Expression profiling by array GSM319874 - mock

GSM319877 - mock, replicate

GSM319875 - AZM 0.5 ug/ml

GSM319876 - AZM 2 ug/ml

GSM319878 - AZM 2 ug/ml, replicate

PMID: 19393329
GSE7704 NCBI GEO In vivo evidence of Pseudomonas aeruignosa nutrient acquisition and pathogenesis in the cystic fibrosis lung Expression profiling by array GSM187265 - PAO1 minimal media citrate replicate1

GSM198188 - PAO1 minimal media palmitate replicate 3

GSM198191 - PAO1 minimal media phosphatidylcholine replicate 3

GSM187281 - CF Sputum pool isolate minimal media citrate replicate2

GSM187284 - CF Sputum in vivo replicate2

GSM187266 - PAO1 minimal media citrate replicate2

GSM187282 - CF Sputum pool isolate minimal media citrate replicate3

GSM198187 - PAO1 minimal media palmitate replicate 2

GSM198190 - PAO1 minimal media phosphatidylcholine replicate 2

GSM187267 - PAO1 minimal media citrate replicate3

GSM187270 - CF Sputum pool isolate minimal media citrate replicate1

GSM187283 - CF Sputum in vivo replicate1

GSM198186 - PAO1 minimal media palmitate replicate 1

GSM198189 - PAO1 minimal media phosphatidylcholine replicate 1

PMID: 17724070
GSE9989 NCBI GEO Tobramycin Treatment of P. aeruginosa Biofilms Grown on CFBE41o- Cells Expression profiling by array GSM252496 - P.aeruginosaCFBEbiofilm_untreated_Sample1

GSM252506 - P.aeruginosaCFBEbiofilm_Tb-treated_Sample1

GSM252505 - P.aeruginosaCFBEbiofilm_untreated_Sample3

GSM252508 - P.aeruginosaCFBEbiofilm_Tb-treated_Sample3

GSM252501 - P.aeruginosaCFBEbiofilm_untreated_Sample2

GSM252507 - P.aeruginosaCFBEbiofilm_Tb-treated_Sample2

PMID: 18212077
GSE13871 NCBI GEO Pseudomonas aeruginosa PA14 wild-type vs the tpbA (PA14_13660) mutant Expression profiling by array GSM349047 - PA14 (rep2) LB biofilm 7 h 37C

GSM375703 - tpbA mutant LB biofilm 4 h 37C

GSM349045 - tpbA mutant (rep1) LB biofilm 7 h 37C

GSM349048 - tpbA mutant (rep2) LB biofilm 7 h 37C

GSM375702 - PA14 LB biofilm 4 h 37C

GSM349042 - PA14 (rep1) LB biofilm 7 h 37C

GSE25128 NCBI GEO Gene expression data from Pseudomonas aeruginosa strains isolated from cystic fibrosis lung infections Expression profiling by array GSM617286 - biofilm grown QS- strain UUPA85, biological rep 1

GSM617289 - biofilm grown QS+ strain UUPA38, biological rep 1

GSM617296 - planktonic grown QS+ strain UUPA38, biological rep 2

GSM617287 - biofilm grown QS- strain UUPA85, biological rep 2

GSM617290 - biofilm grown QS+ strain UUPA38, biological rep 2

GSM617293 - planktonic grown QS- strain UUPA85, biological rep 2

GSM617292 - planktonic grown QS- strain UUPA85, biological rep 1

GSM617295 - planktonic grown QS+ strain UUPA38, biological rep 1

GSM617288 - biofilm grown QS- strain UUPA85, biological rep 3

GSM617291 - biofilm grown QS+ strain UUPA38, biological rep 3

GSM617294 - planktonic grown QS- strain UUPA85, biological rep 3

GSM617297 - planktonic grown QS+ strain UUPA38, biological rep 3

GSE10030 NCBI GEO Comparison of tobramycin-treated PA14 biofilm/CFBE and planktonic cultures Expression profiling by array GSM252496 - P.aeruginosaCFBEbiofilm_untreated_Sample1

GSM252501 - P.aeruginosaCFBEbiofilm_untreated_Sample2

GSM252505 - P.aeruginosaCFBEbiofilm_untreated_Sample3

GSM252506 - P.aeruginosaCFBEbiofilm_Tb-treated_Sample1

GSM252507 - P.aeruginosaCFBEbiofilm_Tb-treated_Sample2

GSM252508 - P.aeruginosaCFBEbiofilm_Tb-treated_Sample3

GSM252559 - P.aeruginosaPlanktonic_untreated_Sample1

GSM252560 - P.aeruginosaPlanktonic_untreated_Sample2

GSM252561 - P.aeruginosaPlanktonic_Tb-treated_Sample1

GSM252562 - P.aeruginosaPlanktonic_Tb-treated_Sample2

PMID: 18212077
GSE21966 NCBI GEO Transcriptional profiling of P. aeruginosa isolated from 3 individuals with cystic fibrosis over time Expression profiling by array GSM546250 - Pa_C3640D_1

GSM546253 - Pa_C4278M_2

GSM546256 - Pa_C4218C_1

GSM546263 - Pa_C5912M_2

GSM546266 - Pa_C5914M_1

GSM546269 - Pa_C0324C_3

GSM546272 - Pa_C2159M_1

GSM546279 - Pa_PA14_3

GSM546246 - Pa_C3470C_1

GSM546249 - Pa_C3639M_2

GSM546252 - Pa_C4278M_1

GSM546259 - Pa_C4219D_2

GSM546262 - Pa_C5912M_1

GSM546265 - Pa_C5913C_3

GSM546268 - Pa_C0324C_2

GSM546275 - Pa_C3488D_2

GSM546278 - Pa_PA14_1

GSM546281 - Pa_PAO1_3

GSM546244 - Pa_C2773C_1

GSM546247 - Pa_C3470C_2

GSM546251 - Pa_C3640D_2

GSM546254 - Pa_C1913C_1

GSM546257 - Pa_C4218C_2

GSM546260 - Pa_C4220M_1

GSM546267 - Pa_C5914M_2

GSM546270 - Pa_C0476M_1

GSM546273 - Pa_C2159M_2

GSM546276 - Pa_C5623M_1

GSM546245 - Pa_C2773C_3

GSM546248 - Pa_C3639M_1

GSM546255 - Pa_C1913C_2

GSM546258 - Pa_C4219D_1

GSM546261 - Pa_C4220M_2

GSM546264 - Pa_C5913C_2

GSM546271 - Pa_C0476M_2

GSM546274 - Pa_C3488D_1

GSM546277 - Pa_C5623M_2

GSM546280 - Pa_PAO1_1

PMID: 20856824
GSE10362 NCBI GEO Expression data from sequential P. aeruginosa cystic fibrosis (CF) isolates Expression profiling by array GSM261915 - Earliest PA-Isolate M1-1

GSM261922 - PA-Isolate M11-2

GSM261925 - PA-Isolate M13-2

GSM261928 - PA-Isolate M22-2

GSM261935 - PA-Isolate M25-3

GSM261938 - PA-Isolate M26-3

GSM261916 - Earliest PA-Isolate M1-2

GSM261919 - PA-Isolate M9-2

GSM261923 - PA-Isolate M11-3

GSM261926 - PA-Isolate M13-3

GSM261929 - PA-Isolate M22-3

GSM261932 - PA-Isolate M23-3

GSM261917 - Earliest PA-Isolate M1-3

GSM261920 - PA-Isolate M9-3

GSM261927 - PA-Isolate M22-1

GSM261930 - PA-Isolate M23-1

GSM261933 - PA-Isolate M25-1

GSM261936 - PA-Isolate M26-1

GSM261918 - PA-Isolate M9-1

GSM261921 - PA-Isolate M11-1

GSM261924 - PA-Isolate M13-1

GSM261931 - PA-Isolate M23-2

GSM261934 - PA-Isolate M25-2

GSM261937 - PA-Isolate M26-2

PMID: 17152010
PMID: 19459782
GSE34141 NCBI GEO Phenotypic and Genome-Wide Analysis of an Antibiotic-Resistant Small Colony Variant of Pseudomonas aeruginosa Expression profiling by array GSM999071 - WT, 24h, rep3

GSM999074 - WT, 48h, rep3

GSM999077 - SCV, 24h, rep3

GSM999080 - SCV, 48h, rep3

GSM999070 - WT, 24h, rep2

GSM999073 - WT, 48h, rep2

GSM999076 - SCV, 24h, rep2

GSM999075 - SCV, 24h, rep1

GSM999078 - SCV, 48h, rep1

GSM999069 - WT, 24h, rep1

GSM999072 - WT, 48h, rep1

GSM999079 - SCV, 48h, rep2

PMID: 22195037
GSE2885 NCBI GEO Iron starvation effect on PA2384 null mutant Expression profiling by array GSM63145 - WT-OD0.2 replicate 1

GSM63154 - WT-OD0.2 replicate 2

GSM63149 - WT-OD1.3 replicate 1

GSM63157 - WT-OD1.3 replicate 2

GSM63152 - WT-OD2.1 replicate 1

GSM63162 - WT-OD2.1 replicate 2

GSM63125 - PA2384-OD0.2 replicate 1

GSM63153 - PA2384-OD0.2 replicate 2

GSM63147 - PA2384-OD1.3 replicate 1

GSM63155 - PA2384-OD 1.3 replicate 2

GSM63150 - PA2384-OD 2.1 replicate 1

GSM63158 - PA2384-OD 2.1 replicate 2

GSE17116 NCBI GEO Pseudomonas aeruginosa PA14, pqsE and PQS Expression profiling by array GSM427080 - pqsE rep1

GSM428018 - PA14 OD3 rep2

GSM428034 - PQS treated mvfR mutant constitutively expressing PqsE from a plasmid rep1

GSM427086 - pqsE rep3

GSM428021 - PA14 constitutively expressing PqsE from a plasmid rep2

GSM427085 - pqsE rep2

GSM428020 - PA14 constitutively expressing PqsE from a plasmid rep1

GSM428023 - mvfR mutant constitutively expressing PqsE from a plasmid rep1

GSM428033 - mvfR mutant constitutively expressing PqsE from a plasmid rep3

GSM428036 - PQS treated mvfR mutant constitutively expressing PqsE from a plasmid rep3

GSM428016 - PA14 OD3 rep1

GSM428019 - PA14 OD3 rep3

GSM428022 - PA14 constitutively expressing PqsE from a plasmid rep3

GSM428032 - mvfR mutant constitutively expressing PqsE from a plasmid rep2

GSM428035 - PQS treated mvfR mutant constitutively expressing PqsE from a plasmid rep2

GSE4614 NCBI GEO Pseudomonas aeruginosa response to airway epithelia Expression profiling by array GSM103304 - PAO1 in TSB, replicate 1

GSM103316 - PAO1 in TSB, replicate 2

GSM103319 - PAOSC11 in TSB, replicate 1

GSM103320 - PAOSC11 in TSB, replicate 2

GSM103317 - PAO1 from epithelia, replicate 1

GSM103318 - PAO1 from epithelia, replicate 2

GSM103321 - PAOSC11 from epithelia, replicate 1

GSM103322 - PAOSC11 from epithelia, replicate 2

PMID: 17166692
GSE21704 NCBI GEO Expression profiles of Pseudomonas aeruginosa TBCF10839 wild type and nadk1 mutant under oxidative stress conditions Expression profiling by array GSM541640 - PaeTBCF10839_wildtype_H2O2_rep1

GSM541647 - PaeTBCF10839_nadK1::Tn5_PMN_rep2

GSM541641 - PaeTBCF10839_wildtype_H2O2_rep2

GSM541644 - PaeTBCF10839_nadK1::Tn5_H2O2_rep1

GSM541642 - PaeTBCF10839_wildtype_PMN_rep1

GSM541645 - PaeTBCF10839_nadK1::Tn5_H2O2_rep2

GSM541648 - PaeTBCF10839_wildtype_LB_rep1

GSM541643 - PaeTBCF10839_wildtype_PMN_rep2

GSM541646 - PaeTBCF10839_nadK1::Tn5_PMN_rep1

GSM541649 - PaeTBCF10839_wildtype_LB_rep2

GSE25129 NCBI GEO Comparative genomic hybridisation data from Pseudomonas aeruginosa strains isolated from cystic fibrosis lung infections Genome variation profiling by array GSM617299 - isolate UUPA85, microarray rep 2

GSM617298 - isolate UUPA85, microarray rep 1

GSM617301 - isolate UUPA38, microarray rep 2

GSM617300 - isolate UUPA38, microarray rep 1

GSE12207 NCBI GEO Biofilms and type III secretion are not mutually exclusive in Pseudomonas aeruginosa Expression profiling by array GSM307118 - Colonies after 15 hrs, biological replicate 1

GSM307121 - Colonies after 40 hrs, biological replicate 1

GSM307124 - Biofilms after 3 days, biological replicate 1

GSM307114 - Planktonic cells exp phase, biological replicate 3

GSM307117 - Planktonic cells stat phase, biological replicate 3

GSM307120 - Colonies after 15 hrs, biological replicate 3

GSM307123 - Colonies after 40 hrs, biological replicate 3

GSM307112 - Planktonic cells exp phase, biological replicate 1

GSM307115 - Planktonic cells stat phase, biological replicate 1

GSM307122 - Colonies after 40 hrs, biological replicate 2

GSM307125 - Biofilms after 3 days, biological replicate 2

GSM307113 - Planktonic cells exp phase, biological replicate 2

GSM307116 - Planktonic cells stat phase, biological replicate 2

GSM307119 - Colonies after 15 hrs, biological replicate 2

GSM307126 - Biofilms after 3 days, biological replicate 3

PMID: 19246740
GSE9592 NCBI GEO P. aeruginosa PA14-WT vs pyrF mutant vs pyrF mutant w/uracil Expression profiling by array GSM242671 - PA14 WT LB 37C 7h biofilms

GSM318716 - PA14 WT w/10 mM uracil LB 37C 7h biofilms

GSM242677 - PA14 pyrF w/1 mM uracil LB 37C 7h biofilms

GSM242676 - PA14 pyrF LB 37C 7h biofilms

GSE12738 NCBI GEO Expression data from Pseudomonas aeruginosa exposed to a low concentration of Azithromycin Expression profiling by array GSM319876 - AZM 2 ug/ml

GSM319875 - AZM 0.5 ug/ml

GSM319878 - AZM 2 ug/ml, replicate

GSM319874 - mock

GSM319877 - mock, replicate

PMID: 19393329
GSE9991 NCBI GEO Tobramycin Treatment of Planktonic Pseudomonas aeruginosa Expression profiling by array GSM252560 - P.aeruginosaPlanktonic_untreated_Sample2

GSM252559 - P.aeruginosaPlanktonic_untreated_Sample1

GSM252562 - P.aeruginosaPlanktonic_Tb-treated_Sample2

GSM252561 - P.aeruginosaPlanktonic_Tb-treated_Sample1

PMID: 18212077
GSE24784 NCBI GEO Gene expression profile of pellicle cells of Pseudomonas aeruginosa Expression profiling by array GSM432866 - PAO1ut early stationary #1

GSM610406 - PAO1ut pellicle #1

GSM432867 - PAO1ut early stationary #2

GSM610407 - PAO1ut pellicle #2

PMID: 21395624
GSE2885 NCBI GEO PA2384 and iron starvation in P. aeruginosa Expression profiling by array GSM63153 - PA2384-OD0.2 replicate 2

GSM63162 - WT-OD2.1 replicate 2

GSM63125 - PA2384-OD0.2 replicate 1

GSM63147 - PA2384-OD1.3 replicate 1

GSM63150 - PA2384-OD 2.1 replicate 1

GSM63157 - WT-OD1.3 replicate 2

GSM63149 - WT-OD1.3 replicate 1

GSM63152 - WT-OD2.1 replicate 1

GSM63155 - PA2384-OD 1.3 replicate 2

GSM63158 - PA2384-OD 2.1 replicate 2

GSM63145 - WT-OD0.2 replicate 1

GSM63154 - WT-OD0.2 replicate 2

GSE26142 NCBI GEO Fitness Landscape of Antibiotic Tolerance in Pseudomonas aeruginosa Biofilms Expression profiling by array GSM641847 - SAH502

GSM641846 - SAH108_R2

GSM641845 - SAH108_R1

GSM641848 - SAH087

GSM641849 - SAH084

PMID: 22028649
GSE9255 NCBI GEO P. aeruginosa PAO1 PA2663 mutant vs. wild type strain Expression profiling by array GSM234929 - PA2663 mutant

GSM234928 - PAO1 wild-type

PMID: 18157527
GSE31227 NCBI GEO Expression data of Pseudomonas aeruginosa isolates from Cystic Fibrosis patients in Denmark Expression profiling by array GSM774087 - CF30-1979 isolate, biological rep3

GSM774090 - CF43-1973 isolate, biological rep3

GSM774093 - CF66-1973 isolate, biological rep3

GSM774100 - CF105-1973 isolate, biological rep1

GSM774103 - CF114-1973 isolate, biological rep1

GSM774106 - CF173-1984 isolate, biological rep1

GSM774109 - CF173-2002 isolate, biological rep1

GSM774116 - CF243-2002 isolate, biological rep2

GSM774119 - CF333-1991 isolate, biological rep2

GSM774122 - CF333-1997 isolate, biological rep2

GSM774129 - CF333-2005 isolate, biological rep3

GSM774132 - CF333-2007 isolate, biological rep3

GSM774135 - B6-0 isolate, biological rep3

GSM774138 - B6-4 isolate, biological rep3

GSM774145 - B12-7 isolate, biological rep1

GSM774148 - B38-1 isolate, biological rep1

GSM774151 - B38-2M isolate, biological rep1

GSM774154 - B38-2NM mutant, biological rep1

GSM774161 - PAO1, biological rep2

GSM774086 - CF30-1979 isolate, biological rep2

GSM774089 - CF43-1973 isolate, biological rep2

GSM774096 - CF66-1992 isolate, biological rep3

GSM774099 - CF66-2008 isolate, biological rep3

GSM774102 - CF105-1973 isolate, biological rep3

GSM774105 - CF114-1973 isolate, biological rep3

GSM774112 - CF173-2005 isolate, biological rep1

GSM774115 - CF243-2002 isolate, biological rep1

GSM774118 - CF333-1991 isolate, biological rep1

GSM774121 - CF333-1997 isolate, biological rep1

GSM774125 - CF333-2003 isolate, biological rep2

GSM774128 - CF333-2005 isolate, biological rep2

GSM774131 - CF333-2007 isolate, biological rep2

GSM774134 - B6-0 isolate, biological rep2

GSM774141 - B12-0 isolate, biological rep3

GSM774144 - B12-4 isolate, biological rep3

GSM774147 - B12-7 isolate, biological rep3

GSM774150 - B38-1 isolate, biological rep3

GSM774157 - B38-6M isolate, biological rep1

GSM774160 - PAO1, biological rep1

GSM774085 - CF30-1979 isolate, biological rep1

GSM774092 - CF66-1973 isolate, biological rep2

GSM774095 - CF66-1992 isolate, biological rep2

GSM774098 - CF66-2008 isolate, biological rep2

GSM774101 - CF105-1973 isolate, biological rep2

GSM774108 - CF173-1984 isolate, biological rep3

GSM774111 - CF173-2002 isolate, biological rep3

GSM774114 - CF173-2005 isolate, biological rep3

GSM774117 - CF243-2002 isolate, biological rep3

GSM774124 - CF333-2003 isolate, biological rep1

GSM774127 - CF333-2005 isolate, biological rep1

GSM774130 - CF333-2007 isolate, biological rep1

GSM774137 - B6-4 isolate, biological rep2

GSM774140 - B12-0 isolate, biological rep2

GSM774143 - B12-4 isolate, biological rep2

GSM774146 - B12-7 isolate, biological rep2

GSM774153 - B38-2M isolate, biological rep3

GSM774156 - B38-2NM mutant, biological rep3

GSM774159 - B38-6M isolate, biological rep3

GSM774162 - PAO1, biological rep3

GSM774088 - CF43-1973 isolate, biological rep1

GSM774091 - CF66-1973 isolate, biological rep1

GSM774094 - CF66-1992 isolate, biological rep1

GSM774097 - CF66-2008 isolate, biological rep1

GSM774104 - CF114-1973 isolate, biological rep2

GSM774107 - CF173-1984 isolate, biological rep2

GSM774110 - CF173-2002 isolate, biological rep2

GSM774113 - CF173-2005 isolate, biological rep2

GSM774120 - CF333-1991 isolate, biological rep3

GSM774123 - CF333-1997 isolate, biological rep3

GSM774126 - CF333-2003 isolate, biological rep3

GSM774133 - B6-0 isolate, biological rep1

GSM774136 - B6-4 isolate, biological rep1

GSM774139 - B12-0 isolate, biological rep1

GSM774142 - B12-4 isolate, biological rep1

GSM774149 - B38-1 isolate, biological rep2

GSM774152 - B38-2M isolate, biological rep2

GSM774155 - B38-2NM mutant, biological rep2

GSM774158 - B38-6M isolate, biological rep2

PMID: 21851621
GSE4614 NCBI GEO The Influence of Human Respiratory Epithelia on Pseudomonas aeruginosa Gene Expression Expression profiling by array GSM103316 - PAO1 in TSB, replicate 2

GSM103319 - PAOSC11 in TSB, replicate 1

GSM103322 - PAOSC11 from epithelia, replicate 2

GSM103318 - PAO1 from epithelia, replicate 2

GSM103321 - PAOSC11 from epithelia, replicate 1

GSM103304 - PAO1 in TSB, replicate 1

GSM103317 - PAO1 from epithelia, replicate 1

GSM103320 - PAOSC11 in TSB, replicate 2

PMID: 17166692
GSE7704 NCBI GEO Pseudomonas aeruginosa from cystic fibrosis lungs Expression profiling by array GSM187265 - PAO1 minimal media citrate replicate1

GSM187266 - PAO1 minimal media citrate replicate2

GSM187267 - PAO1 minimal media citrate replicate3

GSM198186 - PAO1 minimal media palmitate replicate 1

GSM198187 - PAO1 minimal media palmitate replicate 2

GSM198188 - PAO1 minimal media palmitate replicate 3

GSM198189 - PAO1 minimal media phosphatidylcholine replicate 1

GSM198190 - PAO1 minimal media phosphatidylcholine replicate 2

GSM198191 - PAO1 minimal media phosphatidylcholine replicate 3

GSM187283 - CF Sputum in vivo replicate1

GSM187284 - CF Sputum in vivo replicate2

GSM187270 - CF Sputum pool isolate minimal media citrate replicate1

GSM187281 - CF Sputum pool isolate minimal media citrate replicate2

GSM187282 - CF Sputum pool isolate minimal media citrate replicate3

PMID: 17724070
GSE17179 NCBI GEO Definition of the Pseudomonas aeruginosa Anr and Dnr Regulons Expression profiling by array GSM429475 - Pseudomonas aeruginosa, PAO1, aerobic, replicate2

GSM429478 - Pseudomonas aeruginosa strain PAO6261, anr mutant, anaerobic, replicate1

GSM429481 - Pseudomonas aeruginosa strain RM536, dnr mutant, anaerobic, replicate2

GSM429472 - Pseudomonas aeruginosa, PAO1, aerobic, replicate1

GSM429479 - Pseudomonas aeruginosa strain PAO6261, anr mutant, anaerobic, replicate2

GSM429476 - Pseudomonas aeruginosa, PAO1, anaerobic, replicate1

GSM429477 - Pseudomonas aeruginosa, PAO1, anaerobic, replicate2

GSM429480 - Pseudomonas aeruginosa strain RM536, dnr mutant, anaerobic, replicate1

PMID: 20553552
GSE6741 NCBI GEO Response to low oxygen conditions Expression profiling by array GSM155244 - cells grown with 20% oxygen #1

GSM155245 - cells grown with 20% oxygen #2

GSM155240 - cells grown with 0.4% oxygen #1

GSM155241 - cells grown with 0.4% oxygen #2

GSM155242 - cells grown with 2% oxygen #1

GSM155243 - cells grown with 2% oxygen #2

GSM155231 - cells grown with 0% oxygen + 100mM nitrate #1

GSM155239 - cells grown with 0% oxygen + 100mM nitrate #2

PMID: 17581126
GSE36340 NCBI GEO Comparative Profiling of Pseudomonas aeruginosa Strains Reveals Differential Expression of Novel Unique and Conserved Small RNAs Non-coding RNA profiling by high throughput sequencing GSM889306 - DSH_PA14_exp1

GSM889305 - DSH_PAO1_exp2

GSM889304 - DSH_PAO1_exp1

GSM889307 - DSH_PA14_exp2

PMID: 22590564
GSE29665 NCBI GEO P. aeruginosa PA14 WT in LB medium vs in LB with 10 mM adenosine medium Expression profiling by array GSM735749 - PA14 WT with adenosine after 7hr at 37C

GSM735748 - PA14 WT after 7hr at 37C

PMID: 22414222
GSE25130 NCBI GEO Novel virulence factors in host-adapted Pseudomonas aeruginosa infection of the Cystic Fibrosis airways Expression profiling by array; Genome variation profiling by array GSM617286 - biofilm grown QS- strain UUPA85, biological rep 1

GSM617289 - biofilm grown QS+ strain UUPA38, biological rep 1

GSM617292 - planktonic grown QS- strain UUPA85, biological rep 1

GSM617295 - planktonic grown QS+ strain UUPA38, biological rep 1

GSM617290 - biofilm grown QS+ strain UUPA38, biological rep 2

GSM617293 - planktonic grown QS- strain UUPA85, biological rep 2

GSM617296 - planktonic grown QS+ strain UUPA38, biological rep 2

GSM617299 - isolate UUPA85, microarray rep 2

GSM617288 - biofilm grown QS- strain UUPA85, biological rep 3

GSM617291 - biofilm grown QS+ strain UUPA38, biological rep 3

GSM617298 - isolate UUPA85, microarray rep 1

GSM617301 - isolate UUPA38, microarray rep 2

GSM617287 - biofilm grown QS- strain UUPA85, biological rep 2

GSM617294 - planktonic grown QS- strain UUPA85, biological rep 3

GSM617297 - planktonic grown QS+ strain UUPA38, biological rep 3

GSM617300 - isolate UUPA38, microarray rep 1

GSE9926 NCBI GEO Transcriptome Analysis of Agmatine and Putrescine Catabolism in Pseudomonas aeruginosa PAO1 Expression profiling by array GSM251203 - PAO1 in MMP supplemented with glutamate and agmatine by Lu

GSM251206 - PAO1 in MMP supplemented with glutamate and putrescine by Han Ting Chou

GSM251202 - PAO1 in MMP supplemented with glutamate and putrescine by Lu

GSM251205 - PAO1 in MMP supplemented with Glutamate and GABA by Han Ting Chou

GSM251201 - PAO1 in MMP supplemented with glutamate by Lu

GSM251204 - PAO1 in MMP supplemented with glutamate and agmatine by Han Ting Chou

PMID: 18192388
GSE5443 NCBI GEO Uninducible lexA mutant response to ciprofloxacin: time course Expression profiling by array GSM124821 - PA_WT - 0 Min - Replicate 1

GSM124822 - PA_WT - 0 Min - Replicate 2

GSM124814 - PA_lexA(S125A) - 0 Minutes - Replicate 1

GSM124817 - PA_LexA Mutant - 0 Min - Replicate 2

GSM124823 - PA_WT - 30 min - Replicate 1

GSM124824 - PA_WT - 30 Min - Replicate 2

GSM124815 - PA_LexA Mutant - 30 Min - Replicate 1

GSM124818 - PA_LexA Mutant - 30 Min - Replicate 2

GSM124825 - PA_WT - 120 Min - Replicate 1

GSM124826 - PA_WT - 120 Min - Replicate 2

GSM124827 - PA_WT - 120 Min - Replicate 3

GSM124816 - PA_LexA Mutant - 120 Min - Replicate 1

GSM124819 - PA_LexA Mutant - 120 Min - Replicate 2

GSM124820 - PA_LexA Mutant - 120 Min - Replicate 3

PMID: 17015649
GSE36647 NCBI GEO Transcription data for Pseudomonas aeruginosa isolates TBCF10839 and TBCF121838 grown to early and late exponential growth phase Expression profiling by array GSM897996 - TBCF10839 - early exp. - replicate 2

GSM897997 - TBCF121838 - early exp. - replicate 1

GSM898000 - TBCF10839 - late exp. - replicate 2

GSM897999 - TBCF10839 - late exp. - replicate 1

GSM898002 - TBCF121838 - late exp. - replicate 2

GSM897995 - TBCF10839 - early exp. - replicate 1

GSM897998 - TBCF121838 - early exp. - replicate 2

GSM898001 - TBCF121838 - late exp. - replicate 1

GSE28719 NCBI GEO Gene expression of Pseudomonas aeruginosa (Pae) delta PA1006/nbvF mutant in the absence and presence of nitrate Expression profiling by array GSM711447 - PAO1 delta PA1006 strain grown in NY media, replicate 2

GSM711450 - PAO1 delta PA1006 strain grown in NY+NO3 media, replicate 1

GSM711446 - PAO1 delta PA1006 strain grown in NY media, replicate 1

GSM711453 - PAO1 wild-type strain grown in NY+NO3 media, replicate 1

GSM711449 - PAO1 wild-type strain grown in NY media, replicate 2

GSM711452 - PAO1 delta PA1006 strain grown in NY+NO3 media, replicate 3

GSM711455 - PAO1 wild-type strain grown in NY+NO3 media, replicate 3

GSM711448 - PAO1 wild-type strain grown in NY media, replicate 1

GSM711451 - PAO1 delta PA1006 strain grown in NY+NO3 media, replicate 2

GSM711454 - PAO1 wild-type strain grown in NY+NO3 media, replicate 2

GSE34762 NCBI GEO Pseudomonas aeruginosa biofilm cells contain ribosome hibernation factors in the dormant antibiotic-tolerant subpopulation Expression profiling by array GSM854792 - Cells obtained from the top 50 µm of the biofilm, replicate 1

GSM854795 - Cells obtained from the bottom 50 µm of the biofilm, replicate 2

GSM854793 - Cells obtained from the bottom 50 µm of the biofilm, replicate 1

GSM854796 - Cells obtained from the top 50 µm of the biofilm, replicate 3

GSM854799 - Cells obtained from the bottom 50 µm of the biofilm, replicate 4

GSM854794 - Cells obtained from the top 50 µm of the biofilm, replicate 2

GSM854797 - Cells obtained from the bottom 50 µm of the biofilm, replicate 3

GSM854800 - Cells obtained from the top 50 µm of the biofilm, replicate 5

GSM854798 - Cells obtained from the top 50 µm of the biofilm, replicate 4

GSM854801 - Cells obtained from the bottom 50 µm of the biofilm, replicate 5

PMID: 22343293
GSE17296 NCBI GEO Transcriptome analysis of the roxSR and anr mutant strains of Pseudomonas aeruginosa under aerobic conditions Expression profiling by array GSM432862 - roxSR mutant exponential #1

GSM432865 - anr mutant exponential #2

GSM432860 - PAO1ut exponential #1

GSM432863 - roxSR mutant exponential #2

GSM432866 - PAO1ut early stationary #1

GSM432869 - roxSR mutant early stationary #2

GSM432861 - PAO1ut exponential #2

GSM432868 - roxSR mutant early stationary #1

GSM432871 - anr mutant early stationary #2

GSM432864 - anr mutant exponential #1

GSM432867 - PAO1ut early stationary #2

GSM432870 - anr mutant early stationary #1

PMID: 19930444
GSE21508 NCBI GEO The effect of IAN on P. aeruginosa virulence Expression profiling by array GSM537320 - P a PAO1 LB DMSO 5h suspension cells

GSM537321 - P a PAO1 LB 0.1 mg/ml IAN 5h suspension cells

PMID: 20649646
GSE4152 NCBI GEO Transcriptional profiling of copper-stressed Pseudomonas aeruginosa. Expression profiling by array GSM94625 - Cu shock treatment rep2

GSM94621 - adapted Cu treatment rep2

GSM94624 - control for Cu shock treatment rep1

GSM94619 - adapted Cu treatment rep1

GSM94622 - adapted Cu treatment control rep2

GSM94626 - control for Cu shock treatment rep2

GSM94620 - adapted Cu treatment control rep1

GSM94623 - Cu shock treatment rep1

PMID: 17015663
GSE10304 NCBI GEO Gene expression in AES-2 clonal isolates of Pseudomonas aeruginosa Expression profiling by array GSM142281 - Pseudomonas aeruginosa planktonic culture 11 - AES-2

GSM260374 - Pseudomonas aeruginosa AES-2 (clonal isolate 10) - Biofilm culture

GSM142279 - Pseudomonas aeruginosa planktonic culture 9- AES-2

GSM142282 - Pseudomonas aeruginosa planktonic culture 12 - AES-2

GSM260373 - Pseudomonas aeruginosa AES-2 (clonal isolate 9) biofilm culture

GSM260376 - Pseudomonas aeruginosa AES-2 (clonal isolate 11) Biofilm culture

GSM142280 - Pseudomonas aeruginosa planktonic culture 10 -AES-2

GSM260375 - Pseudomonas aeruginosa AES-2 (clonal isolate 12) - Biofilm culture

PMID: 19018014
PMID: 19222585
GSE15697 NCBI GEO A novel extracytoplasmic function (ECF) sigma factor regulates virulence in Pseudomonas aeruginosa Expression profiling by array GSM244065 - Pseudomonas aeruginosa (pMMB67EH) (1)

GSM244066 - Pseudomonas aeruginosa (pMMB67EH) (2)

GSM393044 - Pseudomonas aeruginosa (pMUM3) (1)

GSM393045 - Pseudomonas aeruginosa (pMUM3) (2)

PMID: 19730690
GSE2430 NCBI GEO Azithromycin effect on Pseudomonas aeruginosa Expression profiling by array GSM45588 - - Azithromycin Chip 1

GSM45589 - - Azithromycin Chip 2

GSM45590 - + Azithromycin Chip 3

GSM45591 - + Azithromycin Chip 4

PMID: 16641435
GSE28953 NCBI GEO Pseudomonas aeruginosa two-component regulator BfmR controls bacteriophage lysis and DNA release during biofilm development through PhdA Expression profiling by array GSM717423 - 4101_2

GSM717420 - MS BPao 1 rep2

GSM717421 - MS BPao 1 rep3

GSM717424 - 4101_3

GSM717419 - MS Pao 1 rep1

GSM717422 - 4101_1

PMID: 21696457
GSE4026 NCBI GEO A Distinct QscR Regulon in the Pseudomonas aeruginosa Quorum Sensing Circuit Expression profiling by array GSM92168 - YL113 od 0.5

GSM92171 - YL117 od 1.4

GSM92174 - PAOI replicate 1 od 3.5

GSM92177 - PAOR3 replicate 2 od 3.5

GSM92184 - PAOR3 replicate 1 od 1.4

GSM92187 - PAOI replicate 2 od 0.8

GSM92190 - PAOI replicate 1 od 0.5

GSM92193 - PAOR3 replicate 2 od 0.5

GSM92165 - YL113 od 2.0

GSM92172 - YL117 od 0.8

GSM92175 - PAOI replicate 2 od 3.5

GSM92178 - PAOI replicate 1 od 2.0

GSM92181 - PAOR3 replicate 2 od 2.0

GSM92188 - PAOR3 replicate 1 od 0.8

GSM92191 - PAOI replicate 2 od 0.5

GSM92166 - YL113 od 1.4

GSM92169 - YL117 od 3.5

GSM92176 - PAOR3 replicate 1 od 3.5

GSM92179 - PAOI replicate 2 od 2.0

GSM92182 - PAOI replicate 1 od 1.4

GSM92185 - PAOR3 replicate 2 od 1.4

GSM92192 - PAOR3 replicate 1 od 0.5

GSM92164 - YL113 od 3.5

GSM92167 - YL113 od 0.8

GSM92170 - YL117 od 2.0

GSM92173 - YL117 od 0.5

GSM92180 - PAOR3 replicate 1 od 2.0

GSM92183 - PAOI replicate 2 od 1.4

GSM92186 - PAOI replicate 1 od 0.8

GSM92189 - PAOR3 replicate 2 od 0.8

PMID: 16621831
GSE33284 NCBI GEO Gene Expression analysis of PA 3880 mutant Expression profiling by array GSM822885 - WT STATIONARY Cy3 PA3880 DEL STATIONARY Cy5 14228557

GSM822930 - WT STATIONARY Cy5 PA3880 DEL STATIONARY Cy3 14228561

GSM822852 - WT ANAEROBIC Cy3 PA3880 DEL ANAEROBIC Cy5 14228556

GSM822884 - WT ANAEROBIC Cy5 PA3880.DEL ANAEROBIC Cy3 14228555

GSE9621 NCBI GEO Comparison of global gene expression between Pseudomonas aeruginosa strains 383 and 2192 Expression profiling by array GSM243223 - Strain 383, biological rep1

GSM243222 - Strain 2192, biological rep2

GSM243224 - Strain 383, biological rep2

GSM243221 - Strain 2192, biological rep1

PMID: 18227268
GSE10030 NCBI GEO Tobramycin Treatment of Pseudomonas aeruginosa Expression profiling by array GSM252507 - P.aeruginosaCFBEbiofilm_Tb-treated_Sample2

GSM252561 - P.aeruginosaPlanktonic_Tb-treated_Sample1

GSM252496 - P.aeruginosaCFBEbiofilm_untreated_Sample1

GSM252506 - P.aeruginosaCFBEbiofilm_Tb-treated_Sample1

GSM252505 - P.aeruginosaCFBEbiofilm_untreated_Sample3

GSM252508 - P.aeruginosaCFBEbiofilm_Tb-treated_Sample3

GSM252560 - P.aeruginosaPlanktonic_untreated_Sample2

GSM252501 - P.aeruginosaCFBEbiofilm_untreated_Sample2

GSM252559 - P.aeruginosaPlanktonic_untreated_Sample1

GSM252562 - P.aeruginosaPlanktonic_Tb-treated_Sample2

PMID: 18212077
GSE9657 NCBI GEO Characterization of five novel Pseudomonas aeruginosa cell-surface signaling systems Expression profiling by array GSM244066 - Pseudomonas aeruginosa (pMMB67EH) (2)

GSM244069 - Pseudomonas aeruginosa (pMMB-PA0149) (1)

GSM244072 - Pseudomonas aeruginosa (pMMB-PA2093)

GSM244065 - Pseudomonas aeruginosa (pMMB67EH) (1)

GSM244068 - Pseudomonas aeruginosa (pMMB-PA4896) (2)

GSM244067 - Pseudomonas aeruginosa (pMMB-PA4896) (1)

GSM244070 - Pseudomonas aeruginosa (pMMB-PA0149) (2)

GSM244071 - Pseudomonas aeruginosa (pMMB-PA2050)

PMID: 18086184
GSE17147 NCBI GEO Pseudomonas aeruginosa PA14 MvfR-dependent QS regulatory pathway Expression profiling by array GSM427085 - pqsE rep2

GSM428014 - mvfR OD2.5 rep2

GSM428017 - PA14 OD2.5 rep2

GSM428020 - PA14 constitutively expressing PqsE from a plasmid rep1

GSM428033 - mvfR mutant constitutively expressing PqsE from a plasmid rep3

GSM427080 - pqsE rep1

GSM427086 - pqsE rep3

GSM427099 - 4CABA rep1

GSM427102 - 6CABA rep2

GSM428015 - PA14 OD2.5 rep1

GSM428018 - PA14 OD3 rep2

GSM428021 - PA14 constitutively expressing PqsE from a plasmid rep2

GSM428034 - PQS treated mvfR mutant constitutively expressing PqsE from a plasmid rep1

GSM427100 - 4CABA rep2

GSM427103 - 6CABA rep3

GSM428019 - PA14 OD3 rep3

GSM428022 - PA14 constitutively expressing PqsE from a plasmid rep3

GSM428032 - mvfR mutant constitutively expressing PqsE from a plasmid rep2

GSM428035 - PQS treated mvfR mutant constitutively expressing PqsE from a plasmid rep2

GSM427101 - 6CABA rep1

GSM428013 - mvfR OD2.5 rep1

GSM428016 - PA14 OD3 rep1

GSM428023 - mvfR mutant constitutively expressing PqsE from a plasmid rep1

GSM428036 - PQS treated mvfR mutant constitutively expressing PqsE from a plasmid rep3

PMID: 19497948
GSE17111 NCBI GEO Pseudomonas aeruginosa PA14, mvfR and anthranilic acid analogs Expression profiling by array GSM427101 - 6CABA rep1

GSM428014 - mvfR OD2.5 rep2

GSM428017 - PA14 OD2.5 rep2

GSM427100 - 4CABA rep2

GSM428013 - mvfR OD2.5 rep1

GSM428016 - PA14 OD3 rep1

GSM427103 - 6CABA rep3

GSM428015 - PA14 OD2.5 rep1

GSM427099 - 4CABA rep1

GSM427102 - 6CABA rep2

PMID: 17941706
PMID: 19497948
PMID: 15686549
GSE5443 NCBI GEO Defining the Pseudomonas aeruginosa SOS Response and its Role in the Global Response to the Antibiotic Ciprofloxacin Expression profiling by array GSM124816 - PA_LexA Mutant - 120 Min - Replicate 1

GSM124819 - PA_LexA Mutant - 120 Min - Replicate 2

GSM124822 - PA_WT - 0 Min - Replicate 2

GSM124815 - PA_LexA Mutant - 30 Min - Replicate 1

GSM124818 - PA_LexA Mutant - 30 Min - Replicate 2

GSM124825 - PA_WT - 120 Min - Replicate 1

GSM124820 - PA_LexA Mutant - 120 Min - Replicate 3

GSM124823 - PA_WT - 30 min - Replicate 1

GSM124826 - PA_WT - 120 Min - Replicate 2

GSM124814 - PA_lexA(S125A) - 0 Minutes - Replicate 1

GSM124817 - PA_LexA Mutant - 0 Min - Replicate 2

GSM124821 - PA_WT - 0 Min - Replicate 1

GSM124824 - PA_WT - 30 Min - Replicate 2

GSM124827 - PA_WT - 120 Min - Replicate 3

PMID: 17015649
GSE9621 NCBI GEO Pseudomonas aeruginosa non-mucoid and mucoid strains Expression profiling by array GSM243221 - Strain 2192, biological rep1

GSM243222 - Strain 2192, biological rep2

GSM243223 - Strain 383, biological rep1

GSM243224 - Strain 383, biological rep2

PMID: 18227268
GSE33188 NCBI GEO Expression data from Pseudomonas aeruginosa PAO1 and its isogenic ampR mutant in the presence and absence of sub-MIC ß-lactam exposure. Expression profiling by array GSM821498 - Wild type, induced, biological repl 1

GSM821501 - ampR mutant, uninduced, biological repl 1

GSM821504 - ampR mutant, induced, biological repl 1

GSM821495 - Wild type, uninduced, biological repl 1

GSM821502 - ampR mutant, uninduced, biological repl 2

GSM821505 - ampR mutant, induced, biological repl 2

GSM821497 - Wild type, uninduced, biological repl 3

GSM821500 - Wild type, induced, biological repl 3

GSM821503 - ampR mutant, uninduced, biological repl 3

GSM821496 - Wild type, uninduced, biological repl 2

GSM821499 - Wild type, induced, biological repl 2

GSM821506 - ampR mutant, induced, biological repl 3

PMID: 22479525
GSE14253 NCBI GEO Microarray Analysis of Toxicogenomic Effects of Chlorhexidine diacetate on Pseudomonas aeruginosa Expression profiling by array GSM356958 - Chlorhexidine diacetate_10min_replicate3

GSM356961 - Chlorhexidine diacetate_60min_replicate3

GSM356955 - no treatment_0min_replicate3

GSM356953 - no treatment_0min_replicate1

GSM356956 - Chlorhexidine diacetate_10min_replicate1

GSM356959 - Chlorhexidine diacetate_60min_replicate1

GSM356954 - no treatment_0min_replicate2

GSM356957 - Chlorhexidine diacetate_10min_replicate2

GSM356960 - Chlorhexidine diacetate_60min_replicate2

PMID: 19924977

NCBI Trace Archive

Trace Archive for Pseudomonas aeruginosa PAO1

Trace Archive FTP

NCBI Sequence Read Archive

Sequence Read Archive for Pseudomonas aeruginosa
Annotations
Pseudomonas aeruginosa PAO1 chromosome, complete genome.

Complete Genomic DNA Sequences
Pseudomonas aeruginosa PAO1 chromosome, complete genome. NC_002516
Intergenic DNA
Download

Protein Sequences
Download

Orthologs
Download
Potential Human Homologs
Download

Pseudomonas Genome Database Publication

Winsor GL, Van Rossum T, Lo R, Khaira B, Whiteside MD, Hancock RE, Brinkman FS (2009). Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Nucleic Acids Research 37:D483-488. Pubmed.

Pseudomonas aeruginosa PAO1 genome sequence publication

Stover, K.C., X.Q. Pham, A.L. Erwin, S.D. Mizoguchi, P. Warrener, M.J. Hickey, F.S.L. Brinkman, W. O., Hufnagle, D.J. Kowalik, M. Lagrou, R.L. Garber, L. Goltry, E. Tolentino, S. Westbrock-Wadman, Y. Yuan, L.L. Brody, S.N. Coulter, K.R. Folger, A. Kas, K. Larbig, R. Lim, K. Smith, D. Spencer, G.K.-S. Wong, Z. Wu, I. Paulsen, J. Reizer, M.H. Saier, R.E.W. Hancock, S. Lory, and M.V. Olson (2000). Complete genome sequence of Pseudomonas aeruginosa PAO1: an opportunistic pathogen. Nature. 406: 959-964. Pubmed.

Pseudomonas aeruginosa PAO1 mini-Tn5 lux transposon mutant library (developed by the Hancock Laboratory, UBC)

Pseudomonas aeruginosa PAO1 phoA/lacZ transposon library generated by the Department of Genome Sciences, University of Washington

IslandPath analysis for Pseudomonas aeruginosa (PAO1)

A genome-wide study of Pseudomonas aeruginosa outer membrane protein immunogenicity using self-assembling protein microarrays: Harvard Institute of Proteomics at Harvard Medical School.