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Pseudomonas Genome Database - Annotation for PSEEN0001
               gene PSEEN0001                
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Key to gene image


View in GBrowse: (?)
46 putative orthologs Acknowledgements for this annotation
Feature Overview
Strain Pseudomonas entomophila L48 (Tax ID: 384676) Replicon Pseudomonas entomophila L48 chromosome, complete genome.
(5275 genes, 5888780 bp) [ RefSeq ]
Feature type gene  Genomic location 552 - 2078 (+ strand)
Name dnaA  (View this annotation at our new website) Alternate Names
Locus tag PSEEN0001 Tranposon Mutant Available? No mutants described yet.
Product Information
Feature type CDS
Product Name chromosomal replication initiation protein
Product Name Confidence
Alternate Names
Charge at pH 7 (Predicted):1.34
Kyte-Doolittle Hydropathy Score (Predicted):-0.302
Molecular Weight (Predicted):57.1 kDa
Isoelectric Point (Predicted):7.25
Subcellular localization
CompartmentTypeConfidence LevelExplanation of Localization Confidence
Cytoplasmic Primary Class 3: Subcellular localization computationally predicted by PSORTb V3.0.
Orthologs/Comparative Genomics
Pseudomonas Ortholog Group Explanation of Orthologous Groups
Number of Orthologs in Pseudomonas species 46 putative orthologs
OrtholugeDB (New!) Explanation of Orthologous Groups
Secondary Genomic Features contained in PSEEN0001
Name Sequence Start Stop Strand PubMed IDs Cross Reference Other Notes
Inverted repeat (palindrome) of 899..890
Retrieve 799 808 + 10827456
Software: Palindrome (Emboss 6.2.0)
Evidence: Computationally-predicted
Note: gap 1, opp_overlap 1646494
Confidence: 100
Inverted repeat (palindrome) of 799..808
Retrieve 890 899 - 10827456
Software: Palindrome (Emboss 6.2.0)
Evidence: Computationally-predicted
Note: opp_overlap 3911504, overlap 3911495 3911504
Confidence: 93
Alternate Annotations and Cross-References
Entrez 4090279
EC Number 3.6.-.-
GI 104779317
Precomputed BLAST results NCBI BLINK
RefSeq YP_605815.1
KEGG PSEEN0001
GBrowse Click GBrowse for a GBrowse View of this and other annotations.
Gene Ontology (GO) - Participate in the 2014 Gene Ontology Annotation initiative and get your name on a consortium publication!
Function Classification
PseudoCAP Function Class
Reactions
EC Number 3.6.-.-
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
CDD predictions Explanation of CDD predictions
CDD Accession External Accession Database Short Name Description Start Stop E-value Release Number
232941 TIGR00362 TIGRFAM DnaA chromosomal replication initiator protein DnaA 149 475 2e-167 3.10
223666 COG0593 COG DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] 167 504 7e-140 3.10
234667 PRK00149 PRK dnaA chromosomal replication initiation protein; Reviewed 167 506 0.0 3.10
144046 pfam00308 Pfam Bac_DnaA Bacterial dnaA protein 173 391 5e-105 3.10
197863 smart00760 SMART Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain 416 484 2e-29 3.10
119330 cd06571 CD Bac_DnaA_C C-terminal domain of bacterial DnaA proteins 417 506 3e-33 3.10
 
Comments
Comments binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism
function prediction: 2.1.1 : DNA replication
function prediction: 3.1.2 : Transcriptional level
function prediction: 5.2 : Cell cycle physiology
inference: ab initio prediction:AMIGene:2.0
inference: non-experimental evidence, no additional details recorded
DNA Sequence
Upstream 500 BP Region ATAGGTCAATTTCCAACCAGCCTTTCCTTATGGAAGGTCATTGCGGATCTGTTGCCGGGTTTTGCTTGAAGGCACGGGCAAGAGACACCAACATGAAAAA
AAGAAAGAGGCATATAAAAAGCTTTTCTGAAGAACTTATAGAGCTTATGTGGACAACCTTCTGTGGATAACCATCGCAAGGCCACAAATATCGCCATGTA
CAGAGATTCACAACCTTGTCGGTAACAGGTGCTCTGCTTGTGCCGGTCATGGGTAAAACCTGTGCAGCAAAAGCTAGTTTATCCACAGGCGAATTATCCA
CAGACCAGAACCCAGGGTTGTGCATAGACCTCAATGGCGTTTATCCACAGGGCTTATTCACAGTGCTGGGGTGCCATTTCTGTCTTTTTTTGGCGTGTCA
GCCCCTGTGTCTAGTGCCGCCACGTGTGGATAACTGCTCGCCCGCCCGGTACAATGGCGGTTTGTTTTTGCCTCATCCGGCTTTCAACTCAGGGGATATC
C


BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence GTGTCAGTGGAACTTTGGCAGCAGTGCGTGGAGCTTCTGCGCGATGAACTGCCTGCCCAGCAATTCAACACCTGGATCCGTCCGCTACAGGTCGAAGCCG
AAGGCGACGAGTTGCGCGTCTATGCGCCCAACCGCTTCGTGCTCGACTGGGTTAATGAAAAGTACCTGGGTCGTCTGCTCGAGCTGCTGGGCGAACACGG
CAATGGCCTTGCGCCCGCTCTGTCTCTATTAATAGGCAGCCGTCGCAGCTCGGCACCGCGCGCCGCCCCCAACGCGCCAGTCAGCGCAGCGGTCGCCGCG
ACCATGGCGCAGCAAACACAACAGGCTGCGCAGGTCGTGGTGCCGAGCGAACCCATCGTCGTGCCGGTGGCTGAGCCTGTGCTGAGTGAGGTAGAAGAGC
CGTCCAGCCGGGACAGCTTCGACAGCATGAGCGATTCGGGTTCGGTGCCAGCGGCCAGCGGCCGTACCGAACAGCGCACCGTGCAGGTCGAAGGGGCGCT
CAAGCACACCAGCTACCTGAACCGCACCTTCACCTTCGAAACCTTCGTGGAAGGCAAGTCGAACCAACTGGCGCGCGCCGCCGCCTGGCAGGTCGCCGAC
AACCCCAAGCACGGCTACAACCCGCTCTTCCTTTATGGCGGTGTCGGCTTGGGTAAGACGCACTTGATGCACGCTGTGGGTAACCACCTGCTCAAGAAGA
ACCCGAATGCCAAGGTGGTCTACCTGCATTCCGAGCGTTTCGTCGCCGACATGGTCAAGGCGCTGCAACTCAACGCCATCAACGAGTTCAAGCGCTTCTA
CCGTTCGGTCGACGCGCTGCTCATCGATGACATCCAGTTCTTCGCCCGCAAGGAGCGTTCGCAGGAGGAGTTTTTCCACACCTTCAACGCCCTGCTCGAA
GGTGGCCAGCAGGTGATCCTCACCAGCGACCGCTACCCGAAGGAAATCGAAGGCCTGGAAGAGCGCCTGAAGTCGCGTTTCGGCTGGGGGCTGACGGTGG
CCGTCGAGCCGCCGGAGCTGGAAACCCGCGTGGCGATCTTGATGAAGAAGGCCGACCAGGCCAAGGTCGAGCTGCCGCATGACGCCGCGTTCTTCATCGC
CCAGCGCATCCGCTCCAACGTGCGTGAACTCGAAGGTGCCCTGAAGCGGGTAATTGCCCACTCGCACTTCATGGGCCGCGATATCACCATCGAGCTGATC
CGTGAATCGCTCAAGGATCTGCTGGCGCTGCAGGACAAGCTGGTCAGTGTGGATAACATCCAGCGCACCGTGGCCGAGTACTACAAGATCAAGATCTCCG
ATCTGCTGTCCAAGCGCCGGTCGCGCTCCGTTGCGCGTCCACGCCAGGTGGCCATGGCGTTGTCGAAAGAGCTGACCAACCACAGTCTGCCGGAGATCGG
CGACATGTTTGGCGGCCGCGACCACACCACCGTGCTGCACGCTTGCCGCAAGATCAACGAATTGAAGGAATCCGACGCGGACATCCGCGAGGACTACAAG
AACCTGCTGCGCACGCTGACGACCTGA


BLAST search against this genome or other genomes in database

Downstream 500 BP region TGGCCGTCTGCGCAGCTAATTGAAGGCAAGGGACTAGACCATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCCCTGCAACTGGTCGCCGGCGTC
GTCGAGCGCCGCCAGACCTTGCCGGTCCTGTCCAACGTCCTGCTGGTCGTGCAAGGCCAGCAGCTGTCGTTGACCGGTACCGACCTGGAAGTCGAACTGG
TTGGCCGCGTTCAACTGGAAGAGCCTGCGGAGCCGGGCGAGATTACTGTCCCGGCGCGCAAGCTGATGGACATCTGCAAGAGCCTGCCCAGCGATGCGCT
GATCGATATCAAGGTCGATGAGCAGAAGTTGCTGGTCAAGGCCGGTCGCAGCCGTTTCACCTTGTCCACCCTGCCGGCCAATGACTTCCCGACTGTCGAA
GAAGGTCCTGGCTCGCTGACCTGCCAGCTGGAGCAGAGCAAACTGCGCCGCCTGATCGAGCGCACCAGCTTCGCCATGGCCCAGCAAGACGTGCGCTACT
A


Protein Sequence
Protein Sequence MSVELWQQCVELLRDELPAQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELLGEHGNGLAPALSLLIGSRRSSAPRAAPNAPVSAAVAA
TMAQQTQQAAQVVVPSEPIVVPVAEPVLSEVEEPSSRDSFDSMSDSGSVPAASGRTEQRTVQVEGALKHTSYLNRTFTFETFVEGKSNQLARAAAWQVAD
NPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLE
GGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELI
RESLKDLLALQDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDMFGGRDHTTVLHACRKINELKESDADIREDYK
NLLRTLTT


BLAST search against this genome or other genomes in database
Precomputed BLAST results at BLINK
Operons/Regulons
1) dnaA-dnaN-recF-gyrB ( View in GBrowse  )
Genomic Location: From 552 to 6766 bp on + strand
Genes:
PSEEN0001 (dnaA) PSEEN0002 (dnaN) PSEEN0003 (recF) PSEEN0004 (gyrB)
Estimated Length: 6214 bp (From 552 to 6766 bp)
Evidence:
Class 3: Computationally-predicted.
 [PubMed:18988623]
Cross Reference: DOOR (No external cross-reference is available).