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Pseudomonas Genome Database - Annotation for PST_0001
               gene PST_0001                
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Key to gene image


View in GBrowse: (?)
46 putative orthologs Acknowledgements for this annotation
Feature Overview
Strain Pseudomonas stutzeri A1501 (Tax ID: 379731) Replicon Pseudomonas stutzeri A1501 chromosome, complete genome.
(4209 genes, 4567418 bp) [ RefSeq ]
Feature type gene  Genomic location 380 - 1924 (+ strand)
Name dnaA  (View this annotation at our new website) Alternate Names
Locus tag PST_0001 Tranposon Mutant Available? No mutants described yet.
Product Information
Feature type CDS
Product Name chromosomal replication initiation protein
Product Name Confidence
Alternate Names
Charge at pH 7 (Predicted):6.33
Kyte-Doolittle Hydropathy Score (Predicted):-0.330
Molecular Weight (Predicted):57.6 kDa
Isoelectric Point (Predicted):8.87
Subcellular localization
CompartmentTypeConfidence LevelExplanation of Localization Confidence
Cytoplasmic Primary Class 3: Subcellular localization computationally predicted by PSORTb V3.0.
Orthologs/Comparative Genomics
Pseudomonas Ortholog Group Explanation of Orthologous Groups
Number of Orthologs in Pseudomonas species 46 putative orthologs
OrtholugeDB (New!) Explanation of Orthologous Groups
Alternate Annotations and Cross-References
Entrez 5094553
GI 146280398
Precomputed BLAST results NCBI BLINK
RefSeq YP_001170551.1
KEGG PST_0001
GBrowse Click GBrowse for a GBrowse View of this and other annotations.
Gene Ontology (GO) - Participate in the 2014 Gene Ontology Annotation initiative and get your name on a consortium publication!
Function Classification
PseudoCAP Function Class
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
CDD predictions Explanation of CDD predictions
CDD Accession External Accession Database Short Name Description Start Stop E-value Release Number
234667 PRK00149 PRK dnaA chromosomal replication initiation protein; Reviewed 173 512 0.0 3.10
223666 COG0593 COG DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] 173 510 1e-142 3.10
232941 TIGR00362 TIGRFAM DnaA chromosomal replication initiator protein DnaA 174 481 1e-168 3.10
144046 pfam00308 Pfam Bac_DnaA Bacterial dnaA protein 179 397 3e-105 3.10
197863 smart00760 SMART Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain 422 490 1e-29 3.10
119330 cd06571 CD Bac_DnaA_C C-terminal domain of bacterial DnaA proteins 423 512 3e-34 3.10
 
Comments
Comments binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
Code: L
DNA Sequence
Upstream 500 BP Region TTTTAAGAGACCGGCGATTGTAGAGAAGCTGTCCGGCCAGGTCAATTTCCAACCAGTTCCATCGAGCTGAAAAATAGATAAGAAAGAAAAGAAATATAAG
CTCTTAAGATGTAATGCTTATGTATGTGTGCTCGACTTTCTGTGGATACCTTTCTGAAAGCCTCGCCGTTCATGATGTTCAGCGTTATTGAAACAGGTGG
AAAAGCGGTGTAGCTCTGGTGGGAAGGCTCTGTGAAGTCTGGGGATTAAACTTCGACATATCCACAGATGGGATCGTCCGGAGGTTTCCCACAGCCTTAA
ACACCGCTCTCAGGCAATGTTATCAACAAGCTTGCCGAGCAGCTTTTCATTGTGCTGGACGCCGCGGATTCGCAGTGGC


BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGGGTCGGGTTCTTGTGGATAACCGGCCTGCGCACGGCTACAATGGCCGCCTTCTTACCTCGACAGAGTCGATAGGAGCTTCCGTGTCGGTGGAACTTT
GGCAGCAGTGTGTTGAGCTTTTGCGCGATGAACTGCCTGCTCAGCAATTCAACACATGGATTCGTCCTCTGCAGGTCGAAGGCGACGGCGATGAGCTGCG
CGTCTATGCCCCCAACCGTTTCGTGCTCGACTGGGTCAACGAGAAGTACCTGTCGCGCCTGCTTGAGCTGCTGTCCGAGCGCTCGACCGGACTGGCACCG
GCACTCTCCCTTCTTATAGGTAGCAAGCGCACCTCCGCCGCCGCCCTGCCCTCTGCCGCCGCCGCTGCGCGTGCCCAGCCGCAGCCAGCCGCAGCCGAGT
CGGCCGCGCCCGCTGCGGCGGTACAACAGCAGGCCCCCCGCTTCGAGCCGCTGGTTGCCGAGACACCGGAGCCGGAGCCGCCGCGTACCGAGCGGACCGT
GCAGGTCGAAGGTGGCCTTAAGCACACCAGTTATCTGAACCGCACCTTCACCTTCGAGAATTTCGTCGAAGGCAAGTCCAACCAGCTGGCGCGGGCTGCC
GCCTGGCAGGTGGCGGACAATCCGAAGCATGGTTACAACCCGCTCTTCCTTTATGGTGGCGTGGGTTTGGGCAAGACCCACTTGATGCATGCGGTGGGCA
ACCATCTGCTGAAGAAGAATCCGAACGCCAAGGTGGTGTACCTGCATTCGGAGCGTTTCGTCGCCGACATGGTCAAGGCCCTGCAGCTCAACGCCATCAA
CGAGTTCAAGCGCTTCTATCGTTCGGTGGATGCGCTGCTGATCGATGACATCCAGTTCTTCGCGAAGAAGGAGCGCTCTCAGGAAGAGTTCTTCCATACC
TTCAATGCGCTGCTCGAAGGCGGCCAGCAGGTCATCCTTACCAGTGACCGCTATCCGAAGGAGATCGATGGACTCGAGGAGCGCCTGAAGTCGCGTTTCG
GCTGGGGGTTGACCGTAGCGGTCGAGCCGCCCGAGCTGGAGACCCGCGTGGCGATCCTGATGAAGAAGGCGGATCAGGCCAAGGTGGACCTGCCCCATGA
TGCGGCCTTCTTTATCGCCCAGCGTATTCGCTCCAATGTCCGCGAACTCGAGGGTGCGCTGAAGCGCGTGATCGCTCATGCCCACTTCATGGGCCGCGAC
ATCACCATCGAGCTGATCCGTGAGTCGCTGAAAGACCTGCTGGCGTTGCAGGATAAACTGGTCAGCGTCGACAATATTCAGCGCACCGTGGCCGAGTACT
ACAAGATCAAGATTTCCGATCTGCTGTCCAAGCGGCGTTCCCGTTCGGTCGCGCGTCCTCGGCAAGTGGCCATGGCCCTCTCCAAGGAATTGACCAACCA
CAGCCTGCCGGAGATCGGCGACGCGTTCGGAGGTCGGGATCACACCACGGTGCTGCACGCCTGCCGTAAGATCGCCGAATTGCGGGAAACGGATGCGGAC
ATACGCGAAGACTACAAGAATTTGCTGCGAACTTTGACAACCTGA


BLAST search against this genome or other genomes in database

Downstream 500 BP region GTGCGACCCAATCTATAGGCAAGGGACCAGACCATGCATTTTTCCATTCAGCGCGAAGCCCTGTTGAAACCCCTGCAGCTGGTTGCTGGCGTCGTCGAGC
GCCGTCAGACCTTGCCGGTGCTGTCCAACGTTCTTCTCGTCGTACAGGGGCAGCAGCTGTCGCTGACCGGTACTGACCTGGAAGTCGAACTGGTGGGCCG
TGTCGCGCTGGAAGATGCCGCCGAGCCTGGCGAGATCACCGTGCCGGCGCGCAAGCTCATGGACATCTGCAAGAGCCTGCCGAGCGATGCGCTGATCAGC
ATTCGCCTGGATGACCAGAAGGTCGTCATCAAGTCGGGGCGCAGCCGCTTCACGCTGTCGACCCTGCCGGCCAACGATTTCCCTACCGTGGAAGAAGGTC
CTGGCTCGCTGTCATTCACCGTCGCGCAGGGCAAGCTGCGCAAGCTCATCGAGCGCAGCGCGTTCGCCATGGCCCAGCAGGATGTGCGCTATTACCTCAA
C


Protein Sequence
Protein Sequence MGRVLVDNRPAHGYNGRLLTSTESIGASVSVELWQQCVELLRDELPAQQFNTWIRPLQVEGDGDELRVYAPNRFVLDWVNEKYLSRLLELLSERSTGLAP
ALSLLIGSKRTSAAALPSAAAAARAQPQPAAAESAAPAAAVQQQAPRFEPLVAETPEPEPPRTERTVQVEGGLKHTSYLNRTFTFENFVEGKSNQLARAA
AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFAKKERSQEEFFHT
FNALLEGGQQVILTSDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHAHFMGRD
ITIELIRESLKDLLALQDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIAELRETDAD
IREDYKNLLRTLTT


BLAST search against this genome or other genomes in database
Precomputed BLAST results at BLINK
Operons/Regulons
1) dnaA-dnaN-recF-gyrB ( View in GBrowse  )
Genomic Location: From 380 to 6594 bp on + strand
Genes:
PST_0001 (dnaA) PST_0002 (dnaN) PST_0003 (recF) PST_0004 (gyrB)
Estimated Length: 6214 bp (From 380 to 6594 bp)
Evidence:
Class 3: Computationally-predicted.
 [PubMed:18988623]
Cross Reference: DOOR (No external cross-reference is available).