/*
Copyright (C) 2008 Brinkman Laboratory, Simon Fraser University
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA02111-1307  USA

The Pseudomonas Genome Database is described in Winsor,G.L. et. al.(2005). 
Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. 
Nucleic Acids Res. 33(Database issue): D338-43.
Please cite this publication if you use the source code or database
schema in your research.

For further information, please contact pseudocap-mail@sfu.ca.
 */

function ViewAnno() {

    help_window3 = window.open("/include/help/hAnno.htm", "help_window3", getWinProps("Anno"));

    help_window3.focus();

}

function ViewDBSearchRules() {

    help_window9 = window.open("/include/help/hDBSearchRules.htm", "help_window9", getWinProps("DBSearchRules"));

    help_window9.focus();

}

function ViewOrthologs() {

    help_window1 = window.open("/include/help/hOrthologs.htm", "help_window1", getWinProps("Orthologs"));

    help_window1.focus();

}


function ViewPathways() {

    help_window1 = window.open("/include/help/hPathways.htm", "help_window1", getWinProps("Pathways"));

    help_window1.focus();

}
function ViewHomology() {

    help_window1 = window.open("/include/help/hHomology.htm", "help_window1", getWinProps("Homology"));

    help_window1.focus();

}
function ViewGenomicContext() {

    help_window1 = window.open("/include/help/hGenomicContext.htm", "help_window1", getWinProps("GenomicContext"));

    help_window1.focus();

}
function ViewStructureFeatures() {

    help_window1 = window.open("/include/help/hStructureFeatures.htm", "help_window1", getWinProps("StructureFeatures"));

    help_window1.focus();

}
function ViewOrthologPrediction() {

    help_window9 = window.open("/include/help/hOrthologPrediction.htm", "help_window9", getWinProps("OrthologPrediction"));

    help_window9.focus();

}


function ViewDLSearchResults() {

    help_window5 = window.open("/include/help/hDLSearchResults.htm", "help_window5", getWinProps("DLSearchResults"));

    help_window5.focus();

}

function ViewFuncClass() {

    help_window2 = window.open("/include/help/hFuncClass.htm", "help_window2", getWinProps("FuncClass"));

    help_window2.focus();

}

function ViewBlastHelp() {

    help_window2 = window.open("/include/help/hBlast.htm", "help_window2", getWinProps("BlastHelp"));

    help_window2.focus();

}

function ViewFilterHelp() {

    help_window2 = window.open("/include/help/hBlastFilter.htm", "help_window2", getWinProps("FilterHelp"));

    help_window2.focus();

}

function ViewFastaHelp() {

    help_window2 = window.open("/include/help/hFasta.htm", "help_window2", getWinProps("Fasta"));

    help_window2.focus();

}

function ViewFuncClassU() {

    help_window2_1 = window.open("/include/help/hFuncClassU.htm", "help_window2_1", getWinProps("FuncClassU"));

    help_window2_1.focus();

}

function ViewLocalizationClasses() {

    help_window2_1 = window.open("/include/help/hLocalizationClass.htm", "help_window2_1", getWinProps("LocalizationClass"));

    help_window2_1.focus();

}



function ViewExact() {

    help_window4 = window.open("/include/help/hExact.htm", "help_window4", getWinProps("Exact"));

    help_window4.focus();

}



function ViewBlastCompare() {

    help_window4 = window.open("/include/help/hBlastCompare.htm", "help_window4", getWinProps("BlastCompare"));

    help_window4.focus();

}



function ViewOperonFindingSoftware() {

    help_window4 = window.open("/include/help/hOperonFindingSoftware.htm", "help_window4", getWinProps("OperonFindingSoftware"));

    help_window4.focus();

}

function ViewCOG() {

    help_window2_1 = window.open("/include/help/hCOG.htm", "help_window2_1", getWinProps("COG"));

    help_window2_1.focus();

}

function ViewPFAM() {

    help_window2_1 = window.open("/include/help/hPFAM.htm", "help_window2_1", getWinProps("PFAM"));

    help_window2_1.focus();

}



function ViewTIGRFAM() {

    help_window2_1 = window.open("/include/help/hTIGRFAM.htm", "help_window2_1", getWinProps("TIGRFAM"));

    help_window2_1.focus();

}



function ViewAlignment() {

    help_window2_1 = window.open("/include/help/hAlignment.htm", "help_window2_1", getWinProps("Alignment"));

    help_window2_1.focus();

}



function ViewGO() {

    help_window2_1 = window.open("/include/help/hGO.htm", "help_window2_1", getWinProps("GO"));

    help_window2_1.focus();

}



function ViewLocRating() {

    help_window4 = window.open("/include/help/hLocRating.htm", "help_window4", getWinProps("LocRating"));

    help_window4.focus();

}

function ViewProtNameRating() {

    help_window1 = window.open("/include/help/hProtNameRating.htm", "help_window1", getWinProps("ProtNameRating"));

    help_window1.focus();

}

function ViewCompareAnnotations() {

    help_window1 = window.open("/include/help/hCompareAnnotations.htm", "help_window1", getWinProps("CompareAnnotations"));

    help_window1.focus();

}

function ViewPA() {

    help_window1 = window.open("/include/help/hPA.htm", "help_window1", getWinProps("PA"));

    help_window1.focus();

}

function ViewReorder() {

    help_window6 = window.open("/include/help/hReorder.htm", "help_window6", getWinProps("DBSearchRules"));

    help_window6.focus();

}

function ViewUpdatesRules() {

    help_window7 = window.open("/include/help/hUpdatesRules.htm", "help_window7", getWinProps("UpdatesRules"));

    help_window7.focus();

}


function ViewTransposonHelp() {

    help_window7 = window.open("/include/help/hTransposonHelp.htm", "help_window7", getWinProps("TransposonHelp"));

    help_window7.focus();

}

function ViewTransposonFilteringHelp() {

    help_window7 = window.open("/include/help/hTransposonFiltering.htm", "help_window7", getWinProps("TransposonFilteringHelp"));

    help_window7.focus();

}

function ViewSimpleSearchFieldsHelp() {

    help_window7 = window.open("/include/help/hSimpleSearchFields.htm", "help_window7", getWinProps("SimpleSearchFields"));

    help_window7.focus();

}

function ViewStrainsWithMutantsHelp() {

    help_window7 = window.open("/include/help/hStrainsWithMutants.htm", "help_window7", getWinProps("StrainsWithMutants"));

    help_window7.focus();

}

function ViewGeneCardGBrowseHelp() {

    help_window7 = window.open("/include/help/hGeneCardGBrowse.htm", "help_window7", getWinProps("GeneCardGBrowse"));

    help_window7.focus();

}

function ViewGBrowseViewOptionsHelp() {

    help_window7 = window.open("/include/help/hGBrowseViewOptions.htm", "help_window7", getWinProps("GBrowseViewOptions"));

    help_window7.focus();

}

function ViewOrthologGroups() {

    help_window7 = window.open("/include/help/hOrthologGroups.htm", "help_window7", getWinProps("GBrowseViewOptions"));

    help_window7.focus();

}

function ViewDrugTarget(){
    help_window4=window.open("/include/help/hDrugTarget.htm", "help_window7", getWinProps("DrugTarget"));
    help_window4.focus();
}

function getWinProps(param) {

    var width = screen.width;

    var height = screen.height;

    var posX = (width / 2) - 175;

    var posY = (height / 2) - 220;

    var winprop;

    switch (param) 

    {	
        case "StructureFeatures":

            winprop = "width=500,height=250,scrollbars=0";

            break; 
                    
        case "GenomicContext":

            winprop = "width=500,height=250,scrollbars=0";

            break; 
        case "Homology":

            winprop = "width=500,height=500,scrollbars=1";

            break;       

        case "Pathways":

            winprop = "width=500,height=250,scrollbars=0";

            break; 
        case "Anno":

            winprop = "width=450,height=150,scrollbars=0";

            break; 

        case "DBSearchRules":

            winprop = "width=500,height=440,scrollbars=1";

            break;

        case "DLSearchResults":

            winprop = "width=450,height=150,scrollbars=0";

            break;

        case "FuncClass":

            winprop = "width=450,height=500,scrollbars=1";

            break; 

        case "FuncClassU":

            winprop = "width=450,height=500,scrollbars=1";

            break;
	
        case "Orthologs":

            winprop = "width=500,height=700,scrollbars=1";

            break; 
	
        case "LocalizationClass":

            winprop = "width=500,height=600,scrollbars=1";

            break;

        case "LocRating":

            winprop = "width=500,height=650,scrollbars=1";

            break; 

        case "ProtNameRating":

            winprop = "width=500,height=400,scrollbars=0";

            break; 

        case "Alignment":

            winprop = "width=500,height=350,scrollbars=0";

            break; 

        case "PA":

            winprop = "width=400,height=200,scrollbars=0";

            break; 

        case "COG":

            winprop = "width=500,height=250,scrollbars=0";

            break; 

        case "Fasta":

            winprop = "width=600,height=300,scrollbars=0";

            break; 

        case "GO":

            winprop = "width=500,height=300,scrollbars=0";

            break; 

        case "OrthologPrediction":

            winprop = "width=400,height=250,scrollbars=0";

            break;

        case "Exact":

            winprop = "width=400,height=200,scrollbars=0";

            break;

        case "DrugTarget":

            winprop = "width=400,height=200,scrollbars=0";

            break;

        case "BlastCompare":

            winprop = "width=400,height=400,scrollbars=0";

            break; 

        case "OperonFindingSoftware":

            winprop = "width=400,height=200,scrollbars=0";

            break; 
				
        case "TransposonHelp":

            winprop = "width=500,height=550,scrollbars=0";

            break; 
				
        case "TransposonFilteringHelp":

            winprop = "width=600,height=550,scrollbars=0";

            break; 

		
	
        case "BlastHelp":

            winprop = "width=400,height=425,scrollbars=0";

            break; 

        case "FilterHelp":

            winprop = "width=500,height=450,scrollbars=1";

            break; 				

        case "PFAM":

            winprop = "width=500,height=300,scrollbars=0";

            break; 

        case "TIGRFAM":

            winprop = "width=500,height=300,scrollbars=0";

            break; 

        case "CompareAnnotations":

            winprop = "width=500,height=600,scrollbars=1";

            break;

        case "Reorder":

            winprop = "width=450,height=300";

            break;

        case "UpdatesRules":

            winprop = "width=500,height=440,scrollbars=1";

            break;

        case "SimpleSearchFields":

            winprop = "width=500,height=440,scrollbars=1";

            break;
                                 
        case "StrainsWithMutants":

            winprop = "width=400,height=250,scrollbars=0";

            break;
                                 
        case "GeneCardGBrowse":

            winprop = "width=400,height=600,scrollbars=1";

            break;

        case "GBrowseViewOptions":

            winprop = "width=400,height=600,scrollbars=1";

            break;


        default:

            // Error occured, do nothing

            break; 

    }	

    winprop += ",top=" + posY + ",left=" + posX + ";resizable=1"

    return winprop;

}