Please note that we will be retiring this old site on Tuesday, August 25th, 2015.
At that point, the URL for will bring you to our new site currently hosted at We encourage you to visit the new site now and see a more recent set of updated gene annotations and MANY more Pseudomonas strains.
Pseudomonas Genome Database - Search for DNA motifs

DNA Motif Search

Search for DNA Motifs in Pseudomonas Genomes. Please expect to wait a couple of minutes for reports returning many hits.

Select Genome:

Enter Nucleotide Sequence:

Please enter the sequence in IUPAC format.

e.g. AAGS{3,8}TTN{3,20}TTGAC

(*See instructions)

  • Enter a nucleotide sequence in IUPAC format and click the submit button
  • A variable-length consensus sequence may also be entered in a format to reflect the unknown number of nucleotides

  • e.g. AAGS{3,8}TTN{3,20}TTGAC

    In this example a C or G can appear 3 to 8 times starting at position 4 and any nucleotide can appear 3 to 20 times starting at the position following the the second T

  • Reports are currently limited to those returning 2000 or fewer hits - Please contact us by email for assistance with queries returning more than 2000 hits so that we can help you directly