Strain Overview | |
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Organism Name | Pseudomonas aeruginosa LESB58 |
Species | Pseudomonas aeruginosa |
Strain | LESB58 |
Description/Title | Pseudomonas aeruginosa LESB58 - hypervirulent human isolate |
Annotated Genes | 6028 |
Partial Genes |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | cystic fibrosis |
Host Species Tissue Sampled | lung |
Geographic Location | |
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Location Name | United Kingdom: Liverpool |
Isolation Source | sputum |
Sample Provider | |
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Name | |
Institution | |
Date Collected | 1988 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | paeruginosa | 146 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Gapless Chromosome |
Percent GC | 66.3 |
Cross-References | |
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NCBI BioSample Accession | SAMEA1705916 |
NCBI Taxonomy ID | 557722 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas aeruginosa LESB58 chromosome, complete genome. |
Feature | Count |
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gene | 6028 |
CDS | 5927 |
tRNA | 67 |
pseudo | 34 |
ncRNA | 21 |
rRNA | 13 |
Localization | Count |
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No localization assigned and computational localization prediction using PSORTB not performed | 6 |
Cytoplasmic | 2695 |
Cytoplasmic Membrane | 1323 |
Periplasmic | 172 |
Outer Membrane | 170 |
Extracellular | 74 |
Unknown | 1379 |
Unknown (This protein may have multiple localization sites) | 146 |
Flagellar | 18 |
Fimbrial | 6 |
Host Associated | 6 |
T3SS | 3 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas aeruginosa LESB58 chromosome, complete genome. | 6601757 bp | 66.3% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |