Potential Homo sapiens homologs of Pseudomonas aeruginosa PAO1 proteins

This analysis is based on a simple BLASTP search in which top scoring hits to Pseudomonas aeruginosa PAO1 proteins were returned. This is not a comprehensive list of all human homologs and each hit may not be the most similar protein to each P. aeruginosa protein. BLAST search was against Homo sapiens protein sequence database created from the 'pep' super-set of all translations resulting from Ensembl known or novel gene predictions. For BLASTP search, expect (E) value of 1e-4 was specified - default settings were used for all other arguments.

Downloaded H. sapiens protein fasta file from Ensembl (release 45): ftp://ftp.ensembl.org/pub/release-45/homo_sapiens_45_36g/data/fasta/pep (Homo_sapiens.NCBI36.45.pep.all.fa.gz)

Used Pseudomonas aeruginosa PAO1 protein sequence from www.pseudomonas.com (January 10, 2008 sequence version) for queries.

Results

Download tab-delimited text file containing top scoring hit to each P. aeruginosa PAO1 protein.

View raw BLAST output.