Pseudomonas putida F1, Pput_0004 (gyrB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00433
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006265 DNA topological change
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00433
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005694 chromosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01898
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00433
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00433
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd03366 TOPRIM_TopoIIA_GyrB IPR034160 DNA gyrase subunit B, TOPRIM domain 420 534 9.35998E-78
Pfam PF18053 DNA gyrase B subunit insert domain IPR041423 DNA gyrase subunit B insert domain 566 731 2.6E-53
SUPERFAMILY SSF54211 IPR020568 Ribosomal protein S5 domain 2-type fold 222 394 8.16E-58
PRINTS PR00418 DNA topoisomerase II family signature 527 539 2.6E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 362 376 3.5E-84
Pfam PF01751 Toprim domain IPR006171 TOPRIM domain 421 532 5.6E-17
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 7 17 3.5E-84
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 182 197 3.5E-84
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 244 262 3.5E-84
PRINTS PR00418 DNA topoisomerase II family signature 270 283 2.6E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 314 330 3.5E-84
Gene3D G3DSA:3.40.50.670 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 400 585 3.3E-66
PRINTS PR00418 DNA topoisomerase II family signature 738 754 2.6E-71
PRINTS PR00418 DNA topoisomerase II family signature 422 436 2.6E-71
SUPERFAMILY SSF56719 IPR013760 DNA topoisomerase, type IIA-like domain superfamily 396 797 4.45E-87
PRINTS PR00418 DNA topoisomerase II family signature 489 505 2.6E-71
Pfam PF00986 DNA gyrase B subunit, carboxyl terminus IPR002288 DNA gyrase B subunit, C-terminal 734 795 3.1E-30
PRINTS PR00418 DNA topoisomerase II family signature 72 85 2.6E-71
PRINTS PR00418 DNA topoisomerase II family signature 37 52 2.6E-71
ProSiteProfiles PS50880 Toprim domain profile. IPR006171 TOPRIM domain 420 535 22.229
Hamap MF_01898 DNA gyrase subunit B [gyrB]. IPR011557 DNA gyrase, subunit B 4 806 101.336
Gene3D G3DSA:3.10.20.690 594 685 3.1E-20
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 376 396 3.5E-84
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 775 791 3.5E-84
SMART SM00433 IPR001241 DNA topoisomerase, type IIA 37 799 0.0
Gene3D G3DSA:3.30.230.10 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup 222 394 2.7E-70
PRINTS PR00418 DNA topoisomerase II family signature 115 129 2.6E-71
PRINTS PR00418 DNA topoisomerase II family signature 507 524 2.6E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 759 771 3.5E-84
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 197 210 3.5E-84
Gene3D G3DSA:3.30.565.10 IPR036890 Histidine kinase/HSP90-like ATPase superfamily 3 221 1.3E-93
CDD cd00822 TopoII_Trans_DNA_gyrase 221 379 2.38137E-75
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 221 243 3.5E-84
ProSitePatterns PS00177 DNA topoisomerase II signature. IPR018522 DNA topoisomerase, type IIA, conserved site 424 432 -
TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit IPR011557 DNA gyrase, subunit B 7 805 0.0
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 472 481 3.5E-84
Pfam PF00204 DNA gyrase B IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 222 392 4.3E-57
CDD cd16928 HATPase_GyrB-like 38 217 4.17953E-106
SUPERFAMILY SSF55874 IPR036890 Histidine kinase/HSP90-like ATPase superfamily 7 219 5.11E-75
Gene3D G3DSA:3.40.50.670 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 706 804 1.9E-26
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 34 175 9.6E-22
SMART SM00387 IPR003594 Histidine kinase/HSP90-like ATPase 33 177 9.8E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.