Pseudomonas mendocina ymp, Pmen_0001 (dnaA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003688 DNA replication origin binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01008
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006270 DNA replication initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08299
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08299
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01008
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08299
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006275 regulation of DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08299
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmy02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 452 471 1.2E-52
CDD cd06571 Bac_DnaA_C IPR013159 Chromosomal replication initiator, DnaA C-terminal 403 492 5.7699E-42
Gene3D G3DSA:3.30.300.180 IPR038454 DnaA, N-terminal domain superfamily 1 109 1.8E-30
TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA IPR001957 Chromosomal replication control, initiator DnaA 4 492 0.0
MobiDBLite mobidb-lite consensus disorder prediction 103 144 -
Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. IPR001957 Chromosomal replication control, initiator DnaA 1 493 34.111
ProSitePatterns PS01008 DnaA protein signature. IPR018312 Chromosomal replication control, initiator DnaA, conserved site 452 471 -
SMART SM00760 IPR013159 Chromosomal replication initiator, DnaA C-terminal 402 471 4.4E-43
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 160 370 3.52E-44
Gene3D G3DSA:1.10.1750.10 IPR010921 Trp repressor/replication initiator 401 494 7.6E-37
Gene3D G3DSA:1.10.8.60 325 395 3.0E-23
Pfam PF11638 DnaA N-terminal domain IPR024633 DnaA N-terminal domain 1 61 5.2E-22
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 256 270 1.2E-52
SMART SM00382 IPR003593 AAA+ ATPase domain 191 396 1.9E-6
Pfam PF08299 Bacterial dnaA protein helix-turn-helix IPR013159 Chromosomal replication initiator, DnaA C-terminal 403 471 5.2E-31
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 192 212 1.2E-52
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 290 317 1.2E-52
PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature IPR020591 Chromosomal replication control, initiator DnaA-like 224 238 1.2E-52
Pfam PF00308 Bacterial dnaA protein IPR013317 Chromosomal replication initiator protein DnaA 159 376 1.1E-100
SUPERFAMILY SSF48295 IPR010921 Trp repressor/replication initiator 390 492 2.33E-36
CDD cd00009 AAA 174 317 3.96507E-18
Gene3D G3DSA:3.40.50.300 158 324 8.7E-50

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.