Pseudomonas aeruginosa LESB58, PALES_00021 (recF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00618
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003697 single-stranded DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00618
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00618
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other LESB58 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00365 DNA replication and repair protein RecF [recF]. IPR001238 DNA-binding, RecF 1 369 95.292
Gene3D G3DSA:1.20.1050.90 IPR042174 DNA-binding RecF, domain 2 121 299 4.5E-84
Gene3D G3DSA:3.40.50.300 7 334 4.5E-84
Pfam PF02463 RecF/RecN/SMC N terminal domain IPR003395 RecF/RecN/SMC, N-terminal 3 357 7.7E-33
ProSitePatterns PS00618 RecF protein signature 2. IPR018078 DNA-binding, RecF, conserved site 300 318 -
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 342 6.41E-35
TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF IPR001238 DNA-binding, RecF 1 359 3.6E-115
ProSitePatterns PS00617 RecF protein signature 1. IPR018078 DNA-binding, RecF, conserved site 118 138 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.