Pseudomonas aeruginosa LESB58, PALES_00161

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00563
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008649 rRNA methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00563
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001510 RNA methylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR02008
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008168 methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01189
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF53335
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other LESB58 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 315 327 1.6E-28
CDD cd02440 AdoMet_MTases - - 246 370 2.05774E-6
Pfam PF01189 16S rRNA methyltransferase RsmB/F IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type 238 428 1.3E-62
FunFam G3DSA:3.30.70.1170:FF:000002 Ribosomal RNA small subunit methyltransferase B - - 170 227 1.3E-22
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 219 233 1.6E-28
PANTHER PTHR22807 NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING IPR023267 RNA (C5-cytosine) methyltransferase 122 432 1.8E-66
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 248 258 1.6E-28
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 228 431 4.1E-64
FunFam G3DSA:3.40.50.150:FF:000022 Ribosomal RNA small subunit methyltransferase B - - 231 431 8.4E-73
NCBIfam TIGR00563 JCVI: 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB IPR004573 rRNA small subunit methyltransferase B 7 430 2.9E-128
Gene3D G3DSA:1.10.287.730 Helix hairpin bin - - 143 169 8.8E-9
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 413 430 1.6E-28
Pfam PF01029 NusB family IPR006027 NusB/RsmB/TIM44 1 123 4.3E-20
SUPERFAMILY SSF48013 NusB-like IPR035926 NusB-like superfamily 1 146 4.45E-35
Gene3D G3DSA:1.10.940.10 - IPR035926 NusB-like superfamily 1 140 6.1E-33
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 365 381 1.6E-28
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 135 431 7.91E-72
Gene3D G3DSA:3.30.70.1170 Sun protein; domain 3 - - 170 227 4.4E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.