Pseudomonas aeruginosa UCBPP-PA14, PA14_01940
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest |
| Locus Tag |
PA14_01940
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 176167 - 177318 (+ strand) |
| Transposon Mutants | 1 transposon mutants in UCBPP-PA14 |
| Transposon Mutants in orthologs | 4 transposon mutants in orthologs |
Cross-References
| RefSeq | YP_788314.1 |
| GI | 116053877 |
| Entrez | 4383556 |
| NCBI Locus Tag | PA14_01940 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
RND efflux membrane fusion protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -1.61 |
| Kyte-Doolittle Hydrophobicity Value | -0.119 |
| Molecular Weight (kDa) | 40.4 |
| Isoelectric Point (pI) | 6.53 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AMR gene predictions from CARD database
Identified using the Resistance Gene Identifier (RGI)
| Model Name | Definition | Accession | Model Type (?) | SNP | Cutoff | Bit Score | Percent Identity | CARD Version |
| TriA | TriA is a membrane protein that is fused to TriB and both are required for the triclosan efflux pump function of TriABC-OpmH in P. aeruginosa. [PMID:17720796] | ARO:3003679 | protein homolog model | Strict | 705.7 | 98.69 | 3.2.5 |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 6VEJ | TRANSPORT PROTEIN | 01/02/20 | TriABC transporter from Pseudomonas aeruginosa | Pseudomonas aeruginosa | 4.5 | ELECTRON MICROSCOPY | 98.9 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 422 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000154 (998 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PA14_01940
Search term: RND efflux membrane fusion protein
|
Human Homologs
References
No references are associated with this feature.