| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa PAO1 (Stover et al., 2000) |
| Species | Pseudomonas aeruginosa |
| Strain | PAO1 |
| Description/Title | Sample from Pseudomonas aeruginosa PAO1 |
| Annotated Genes | 5688 |
| Partial Genes |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Geographic Location | |
|---|---|
| Location Name | Australia: Melbourne |
| Isolation Source | wound |
| Sample Provider | |
|---|---|
| Name | |
| Institution | PathoGenesis Corporation |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 549 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 1 |
| Contigs | |
| Contig N50 | 6264404 |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02603714 |
| NCBI Taxonomy ID | 208964 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Pseudomonas aeruginosa PAO1 chromosome, complete genome. |
| Feature | Count |
|---|---|
| gene | 5707 |
| CDS | 5586 |
| tRNA | 63 |
| ncRNA | 45 |
| rRNA | 12 |
| pseudo | 6 |
| tmRNA | 1 |
| Localization | Count |
|---|---|
| No localization assigned and computational localization prediction using PSORTB not performed | 7 |
| Cytoplasmic | 2625 |
| Cytoplasmic Membrane | 1307 |
| Periplasmic | 237 |
| Outer Membrane | 194 |
| Extracellular | 111 |
| Unknown | 1159 |
| Unknown (This protein may have multiple localization sites) | 142 |
| Flagellar | 18 |
| Fimbrial | 6 |
| Host Associated | 11 |
| T3SS | 4 |
| Outer Membrane Vesicle | 338 |
| Feature | Count |
|---|---|
| General function prediction only | 709 |
| Amino acid transport and metabolism | 558 |
| Function unknown | 548 |
| Transcription | 526 |
| Signal transduction mechanisms | 455 |
| Energy production and conversion | 366 |
| Inorganic ion transport and metabolism | 352 |
| Cell wall/membrane/envelope biogenesis | 282 |
| Lipid transport and metabolism | 270 |
| Carbohydrate transport and metabolism | 261 |
| Coenzyme transport and metabolism | 218 |
| Translation, ribosomal structure and biogenesis | 207 |
| Secondary metabolites biosynthesis, transport and catabolism | 206 |
| Posttranslational modification, protein turnover, chaperones | 201 |
| Intracellular trafficking, secretion, and vesicular transport | 182 |
| Replication, recombination and repair | 160 |
| Cell motility | 160 |
| Nucleotide transport and metabolism | 107 |
| Defense mechanisms | 74 |
| Cell cycle control, cell division, chromosome partitioning | 39 |
| Chromatin structure and dynamics | 3 |
| RNA processing and modification | 2 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas aeruginosa PAO1 chromosome, complete genome. | 6264404 bp | 66.6% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |