Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4263
|
Name |
rplC
|
Replicon | chromosome |
Genomic location | 4766625 - 4767260 (- strand) |
Transposon Mutants | 1 transposon mutants in PAO1 |
RefSeq | NP_252953.1 |
GI | 15599459 |
Affymetrix | PA4263_rplC_at |
Entrez | 881728 |
GenBank | AAG07651.1 |
INSDC | AAG07651.1 |
NCBI Locus Tag | PA4263 |
protein_id(GenBank) | gb|AAG07651.1|AE004841_29|gnl|PseudoCAP|PA4263 |
TIGR | NTL03PA04264 |
UniParc | UPI00000C5C8D |
UniProtKB Acc | Q9HWD5 |
UniProtKB ID | RL3_PSEAE |
UniRef100 | UniRef100_A6UZI8 |
UniRef50 | UniRef50_A2SLF7 |
UniRef90 | UniRef90_Q889X1 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
50S ribosomal protein L3
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Detected by two-dimensional gel electrophoresis and mass spectral analysis(PMID:21863142).
|
Charge (pH 7) | 9.90 |
Kyte-Doolittle Hydrophobicity Value | -0.329 |
Molecular Weight (kDa) | 22.6 |
Isoelectric Point (pI) | 10.55 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 100.0 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 100.0 |
6SPB | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6 | Pseudomonas aeruginosa | 2.82 | ELECTRON MICROSCOPY | 100.0 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 100.0 |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 100.0 |
6SPD | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.28 | ELECTRON MICROSCOPY | 100.0 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 620 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG001447 (534 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4263
Search term: rplC
Search term: 50S ribosomal protein L3
|
Ensembl
110, assembly
GRCh38.p14
|
mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379]
E-value:
1.1e-21
Percent Identity:
31.1
|
Ensembl
110, assembly
GRCh38.p14
|
mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379]
E-value:
1.1e-21
Percent Identity:
31.1
|
Ensembl
110, assembly
GRCh38.p14
|
mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379]
E-value:
1.1e-21
Percent Identity:
31.1
|
Regulation of the S10 ribosomal protein operon in E. coli: nucleotide sequence at the start of the operon.
Olins PO, Nomura M
Cell 1981 Oct;26(2 Pt 2):205-11
PubMed ID: 7037196
|
Structure of the Escherichia coli S10 ribosomal protein operon.
Zurawski G, Zurawski SM
Nucleic Acids Res 1985 Jun 25;13(12):4521-6
PubMed ID: 3892488
|
Interaction of the sarcin/ricin domain of 23 S ribosomal RNA with proteins L3 and L6.
Uchiumi T, Sato N, Wada A, Hachimori A
J Biol Chem 1999 Jan 8;274(2):681-6
PubMed ID: 9873002
|
Comparisons of Two Proteomic Analyses of Non-Mucoid and Mucoid Pseudomonas aeruginosa Clinical Isolates from a Cystic Fibrosis Patient.
Rao J, Damron FH, Basler M, Digiandomenico A, Sherman NE, Fox JW, Mekalanos JJ, Goldberg JB
Front Microbiol 2011;2:162
PubMed ID: 21863142
|