Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4898
|
Name |
opdK
Synonym: opdK |
Replicon | chromosome |
Genomic location | 5494460 - 5495713 (- strand) |
Transposon Mutants | 2 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 3 transposon mutants in orthologs |
RefSeq | NP_253585.1 |
GI | 15600091 |
Affymetrix | PA4898_at |
Entrez | 879748 |
GenBank | AAG08283.1 |
INSDC | AAG08283.1 |
NCBI Locus Tag | PA4898 |
protein_id(GenBank) | gb|AAG08283.1|AE004903_1|gnl|PseudoCAP|PA4898 |
TIGR | NTL03PA04899 |
UniParc | UPI00000C5E68 |
UniProtKB Acc | Q9HUR5 |
UniProtKB ID | Q9HUR5_PSEAE |
UniRef100 | UniRef100_Q9HUR5 |
UniRef50 | UniRef50_Q9HUR5 |
UniRef90 | UniRef90_Q9HUR5 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
histidine porin OpdK
|
Synonyms |
vanillate porin OpdK |
Evidence for Translation | |
Charge (pH 7) | 1.90 |
Kyte-Doolittle Hydrophobicity Value | -0.371 |
Molecular Weight (kDa) | 45.8 |
Isoelectric Point (pI) | 7.79 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
2Y2X | MEMBRANE PROTEIN | 12/16/10 | Crystal Structure of Pseudomonas Aeruginosa OpdK with Vanillate | PSEUDOMONAS AERUGINOSA PA01 | 1.65 | X-RAY DIFFRACTION | 100.0 |
2QTK | MEMBRANE PROTEIN | 08/02/07 | Crystal Structure of the outer membrane protein opdK from Pseudomonas aeruginosa | Pseudomonas aeruginosa | 2.8 | X-RAY DIFFRACTION | 100.0 |
3SYS | MEMBRANE PROTEIN | 07/18/11 | Improved crystal structure of Pseudomonas aeruginosa OccK1 (OpdK) | Pseudomonas aeruginosa | 1.65 | X-RAY DIFFRACTION | 100.0 |
Identified by Diamond using e-value cutoff of 0.0001 and returning alignments that span 100% of the query sequence and that have more than 95% identity.
Drug Name | Source Accession | Source DB | Version | Target Accession | Target Description | Percent Identity | Alignment Length | E-Value |
(Hydroxyethyloxy)Tri(Ethyloxy)Octane | DB04233 | DrugBank | 5.1.4 | Q9HUR5 | Vanillate porin OpdK | 100.0 | 417 | 8.2e-245 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 19 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG000239 (1158 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4898
Search term: opdK
Search term: histidine porin OpdK
|
Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE
Genome Res 2005 Feb;15(2):321-9
PubMed ID: 15687295
|