Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4934
|
Name |
rpsR
|
Replicon | chromosome |
Genomic location | 5537059 - 5537289 (- strand) |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
RefSeq | NP_253621.1 |
GI | 15600127 |
Affymetrix | PA4934_rpsR_at |
DNASU | PaCD00008137 |
Entrez | 878035 |
GenBank | AAG08319.1 |
INSDC | AAG08319.1 |
NCBI Locus Tag | PA4934 |
protein_id(GenBank) | gb|AAG08319.1|AE004906_7|gnl|PseudoCAP|PA4934 |
TIGR | NTL03PA04935 |
UniParc | UPI0000134DAD |
UniProtKB Acc | Q9HUN0 |
UniProtKB ID | RS18_PSEAE |
UniRef100 | UniRef100_A6VD47 |
UniRef50 | UniRef50_Q6N5A3 |
UniRef90 | UniRef90_C1DLR3 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
30S ribosomal protein S18
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 12.19 |
Kyte-Doolittle Hydrophobicity Value | -0.607 |
Molecular Weight (kDa) | 8.9 |
Isoelectric Point (pI) | 11.06 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
6SPE | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.6 | ELECTRON MICROSCOPY | 98.6 |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 100.0 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 100.0 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 98.6 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 588 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004549 (536 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4934
Search term: rpsR
Search term: 30S ribosomal protein S18
|
Primary structure of protein S18 from the small Escherichia coli ribosomal subunit.
Yaguchi M
FEBS Lett 1975 Nov 15;59(2):217-20
PubMed ID: 776663
|
The nucleotide sequence of an Escherichia coli chromosomal region containing the genes for ribosomal proteins S6, S18, L9 and an open reading frame.
Schnier J, Kitakawa M, Isono K
Mol Gen Genet 1986 Jul;204(1):126-32
PubMed ID: 3528756
|
Cloning and nucleotide sequencing of the genes rimI and rimJ which encode enzymes acetylating ribosomal proteins S18 and S5 of Escherichia coli K12.
Yoshikawa A, Isono S, Sheback A, Isono K
Mol Gen Genet 1987 Oct;209(3):481-8
PubMed ID: 2828880
|
Interaction of ribosomal proteins S5, S6, S11, S12, S18 and S21 with 16 S rRNA.
Stern S, Powers T, Changchien LM, Noller HF
J Mol Biol 1988 Jun 20;201(4):683-95
PubMed ID: 2459389
|