Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA5337
|
Name |
rpoZ
|
Replicon | chromosome |
Genomic location | 6005899 - 6006165 (+ strand) |
Transposon Mutants | 1 transposon mutants in PAO1 |
RefSeq | NP_254024.1 |
GI | 15600530 |
Affymetrix | PA5337_rpoZ_at |
DNASU | PaCD00008307 |
Entrez | 878048 |
GenBank | AAG08722.1 |
INSDC | AAG08722.1 |
NCBI Locus Tag | PA5337 |
protein_id(GenBank) | gb|AAG08722.1|AE004946_6|gnl|PseudoCAP|PA5337 |
TIGR | NTL03PA05338 |
UniParc | UPI0000134801 |
UniProtKB Acc | Q9HTM1 |
UniProtKB ID | RPOZ_PSEAE |
UniRef100 | UniRef100_A6VEE4 |
UniRef50 | UniRef50_Q5E8P6 |
UniRef90 | UniRef90_A6VEE4 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
RNA polymerase omega subunit
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | -11.03 |
Kyte-Doolittle Hydrophobicity Value | -0.309 |
Molecular Weight (kDa) | 9.8 |
Isoelectric Point (pI) | 3.95 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7XL4 | TRANSCRIPTION | 04/21/22 | Cryo-EM structure of Pseudomonas aeruginosa RNAP sigmaS holoenzyme complexes with transcription factor SutA (closed lobe) | Pseudomonas aeruginosa PAO1 | 3.86 | ELECTRON MICROSCOPY | 100.0 |
7F0R | TRANSCRIPTION/DNA | 06/06/21 | Cryo-EM structure of Pseudomonas aeruginosa SutA transcription activation complex | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SYNTHETIC CONSTRUCT | 5.8 | ELECTRON MICROSCOPY | 100.0 |
7XYA | TRANSCRIPTION | 06/01/22 | The cryo-EM structure of an AlpA-loading complex | Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT | 3.3 | ELECTRON MICROSCOPY | 100.0 |
7VF9 | TRANSCRIPTION | 09/10/21 | Cryo-EM structure of Pseudomonas aeruginosa RNAP sigmaS holoenzyme complexes | Pseudomonas aeruginosa PAO1 | 4.04 | ELECTRON MICROSCOPY | 100.0 |
7XYB | TRANSCRIPTION | 06/01/22 | The cryo-EM structure of an AlpA-loaded complex | Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT | 3.7 | ELECTRON MICROSCOPY | 100.0 |
7XL3 | TRANSCRIPTION | 04/21/22 | Cryo-EM structure of Pseudomonas aeruginosa RNAP sigmaS holoenzyme complexes with transcription factor SutA (open lobe) | Pseudomonas aeruginosa PAO1 | 3.13 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 245 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004906 (536 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA5337
Search term: rpoZ
Search term: RNA polymerase omega subunit
|
The spoU gene of Escherichia coli, the fourth gene of the spoT operon, is essential for tRNA (Gm18) 2'-O-methyltransferase activity.
Persson BC, Jäger G, Gustafsson C
Nucleic Acids Res 1997 Oct 15;25(20):4093-7
PubMed ID: 9321663
|