Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA5385
|
Name |
cdhB
|
Replicon | chromosome |
Genomic location | 6063353 - 6063832 (- strand) |
Transposon Mutants | 2 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
Comment | Transposon insertion into cdhB results in a strain unable to grow using L-carnitine as a sole carbon source. The specific function of CdhB in carnitine catabolism is not known but bioinformatic analysis supports the strong conservation of the cdhCAB genes in all species known to aerobically catabolize L-carnitine. |
RefSeq | NP_254072.1 |
GI | 15600578 |
Affymetrix | PA5385_at |
DNASU | PaCD00008328 |
Entrez | 881644 |
GenBank | AAG08770.1 |
INSDC | AAG08770.1 |
NCBI Locus Tag | PA5385 |
protein_id(GenBank) | gb|AAG08770.1|AE004951_4|gnl|PseudoCAP|PA5385 |
TIGR | NTL03PA05386 |
UniParc | UPI00000C5FD6 |
UniProtKB Acc | Q9HTH9 |
UniProtKB ID | Q9HTH9_PSEAE |
UniRef100 | UniRef100_Q9HTH9 |
UniRef50 | UniRef50_W4NVN7 |
UniRef90 | UniRef90_Q9HTH9 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
CdhB, Carnitine dehydrogenase-related gene B
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | -3.40 |
Kyte-Doolittle Hydrophobicity Value | -0.053 |
Molecular Weight (kDa) | 17.6 |
Isoelectric Point (pI) | 6.43 |
Individual Mappings | |
Additional evidence for subcellular localization |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 51 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004944 (484 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA5385
Search term: cdhB
Search term: CdhB, Carnitine dehydrogenase-related gene B
|
Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE
Genome Res 2005 Feb;15(2):321-9
PubMed ID: 15687295
|