Pseudomonas aeruginosa UCBPP-PA14, PA14_02390

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 1 86 1.26E-22
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 90 297 5.27E-32
CDD cd05466 PBP2_LTTR_substrate - - 92 294 2.91961E-25
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 29 39 2.1E-7
Gene3D G3DSA:3.40.190.290 - - - 93 303 2.4E-23
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 1 84 2.8E-24
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 89 296 2.6E-32
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 18 29 2.1E-7
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 90 8.7E-27
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 3 62 4.1E-22
PANTHER PTHR30419 HTH-TYPE TRANSCRIPTIONAL REGULATOR YBHD - - 1 303 3.9E-74
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 39 50 2.1E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.