Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA0084
|
Name |
tssC1
|
Replicon | chromosome |
Genomic location | 101778 - 103274 (+ strand) |
Transposon Mutants | 2 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 5 transposon mutants in orthologs |
RefSeq | NP_248774.1 |
GI | 15595282 |
Affymetrix | PA0084_at |
Entrez | 879464 |
GenBank | AAG03474.1 |
INSDC | AAG03474.1 |
NCBI Locus Tag | PA0084 |
protein_id(GenBank) | gb|AAG03474.1|AE004447_7|gnl|PseudoCAP|PA0084 |
TIGR | NTL03PA00085 |
UniParc | UPI00000C4F25 |
UniProtKB Acc | Q9I748 |
UniProtKB ID | Q9I748_PSEAE |
UniRef100 | UniRef100_Q9I748 |
UniRef50 | UniRef50_Q4K3N7 |
UniRef90 | UniRef90_Q4K3N7 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
TssC1
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | -16.24 |
Kyte-Doolittle Hydrophobicity Value | -0.428 |
Molecular Weight (kDa) | 55.8 |
Isoelectric Point (pI) | 4.98 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
5N8N | STRUCTURAL PROTEIN | 02/23/17 | Contracted sheath of a Pseudomonas aeruginosa type six secretion system consisting of TssB1 and TssC1 | Pseudomonas aeruginosa | 3.28 | ELECTRON MICROSCOPY | 100.0 |
Source 1 | |
Database | VFDB : VF0334 |
Category | Hcp secretion island-1 encoded type VI secretion system (H-T6SS) |
Evidence |
ECO:0000305
curator inference used in manual assertion
|
Host Organism | |
Notes | |
Reference | 16763151 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 111 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG000083 (1225 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA0084
Search term: tssC1
Search term: TssC1
|
A type VI secretion system of Pseudomonas aeruginosa targets a toxin to bacteria.
Hood RD, Singh P, Hsu F, Güvener T, Carl MA, Trinidad RR, Silverman JM, Ohlson BB, Hicks KG, Plemel RL, Li M, Schwarz S, Wang WY, Merz AJ, Goodlett DR, Mougous JD
Cell Host Microbe 2010 Jan 21;7(1):25-37
PubMed ID: 20114026
|
In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages.
Shalom G, Shaw JG, Thomas MS
Microbiology (Reading) 2007 Aug;153(Pt 8):2689-2699
PubMed ID: 17660433
|